View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5811-10 (Length: 180)

Name: Solexa-NF5811-10
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5811-10
Solexa-NF5811-10
[»] chr8 (2 HSPs)
chr8 (8-176)||(43745217-43745385)
chr8 (37-83)||(12528903-12528949)
[»] chr5 (2 HSPs)
chr5 (8-173)||(28220321-28220486)
chr5 (8-176)||(42555574-42555742)
[»] chr7 (24 HSPs)
chr7 (8-176)||(3147642-3147810)
chr7 (32-176)||(1301858-1302002)
chr7 (40-171)||(8667821-8667952)
chr7 (8-120)||(7877419-7877531)
chr7 (27-171)||(8585341-8585485)
chr7 (36-140)||(8654848-8654952)
chr7 (27-171)||(10494009-10494153)
chr7 (67-167)||(8628961-8629061)
chr7 (32-176)||(8659757-8659901)
chr7 (35-176)||(8640179-8640317)
chr7 (36-117)||(13333145-13333226)
chr7 (40-168)||(17268341-17268469)
chr7 (27-87)||(8559722-8559782)
chr7 (8-80)||(29581567-29581639)
chr7 (8-83)||(8570681-8570756)
chr7 (35-120)||(8382562-8382647)
chr7 (23-120)||(27830561-27830658)
chr7 (27-171)||(8546021-8546165)
chr7 (27-83)||(8582089-8582145)
chr7 (25-176)||(6789899-6790050)
chr7 (36-83)||(8576724-8576771)
chr7 (40-120)||(8591040-8591120)
chr7 (40-171)||(8671265-8671396)
chr7 (66-168)||(17260669-17260771)
[»] chr6 (1 HSPs)
chr6 (8-171)||(28910952-28911115)
[»] chr2 (7 HSPs)
chr2 (40-167)||(12245045-12245172)
chr2 (40-140)||(11999796-11999896)
chr2 (8-140)||(12235059-12235191)
chr2 (8-170)||(16657153-16657315)
chr2 (67-171)||(16661627-16661731)
chr2 (66-139)||(14703836-14703909)
chr2 (28-80)||(43625803-43625855)
[»] chr1 (2 HSPs)
chr1 (28-173)||(15595429-15595571)
chr1 (36-140)||(34466459-34466563)
[»] chr4 (3 HSPs)
chr4 (51-171)||(9335526-9335646)
chr4 (35-171)||(30775649-30775785)
chr4 (38-167)||(35132846-35132975)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 4e-86; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 43745217 - 43745385
Alignment:
Q  8 cattcttgacaggaaattgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcc 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43745217 cattcttgacaggcaattgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgagatttcttcggcacataggtgcttctcctgtcc 43745316  T
Q  108 cttgtacttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggccacaacttcat 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43745317 cttgtacttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggccacaacttcat 43745385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 12528903 - 12528949
Alignment:
Q  37 tctgcaatctcacgcatctttgttagaatcatagatgatatttcttc 83  Q
    ||||||||||| ||||||| || |||||||||||| |||||||||||    
T  12528903 tctgcaatctctcgcatctgtgatagaatcatagaggatatttcttc 12528949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 3e-65; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 28220321 - 28220486
Alignment:
Q  8 cattcttgacaggaaattgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcc 107  Q
    |||||||||||||||||| |||||| | ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  28220321 cattcttgacaggaaattccaaaaaggcctctgcaatctcacgcatctttgttagaaccatagatgagatttcttcggcacataggtgcttctcctgtcc 28220420  T
Q  108 cttgtacttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggccacaactt 173  Q
    |||||||||||||||||||| ||||||||| |||  |||||||||||||||||| |||||||||||    
T  28220421 cttgtacttaacagaaatcatgggtttgtcgttcgttccggaaatgaccttgaatggccacaactt 28220486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 42555742 - 42555574
Alignment:
Q  8 cattcttgacaggaaattgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcc 107  Q
    ||||||||||||| | || |||||||| |||||||||||  |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  42555742 cattcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttcggcgcataggtgtttctcctgtcc 42555643  T
Q  108 cttgtacttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggccacaacttcat 176  Q
    || |||| | ||| |||||| ||| ||| |||| | |||||||||||||||||| ||||||||||||||    
T  42555642 ctcgtacgttacataaatcatgggcttgccatttattccggaaatgaccttgaatggccacaacttcat 42555574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 3147642 - 3147810
Alignment:
Q  8 cattcttgacaggaaattgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcc 107  Q
    ||||||||||||| ||||  |||||   ||||||| |||  |||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  3147642 cattcttgacaggcaattctaaaaactcctctgcagtcttgcgcatctttgttagaaccatagatgagatttcttcagcacataggtgcttctcctgtcc 3147741  T
Q  108 cttgtacttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggccacaacttcat 176  Q
    |||| ||||||| ||||||| |||||||||||||| |||| ||||||||||||| ||||||||| ||||    
T  3147742 cttgcacttaaccgaaatcatgggtttgtcattcactccgcaaatgaccttgaatggccacaacatcat 3147810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 32 - 176
Target Start/End: Original strand, 1301858 - 1302002
Alignment:
Q  32 atgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacggg 131  Q
    ||||||||||||| || |||||||| || || | ||||||||||||||| ||  | || | |||||||||||| |||||||||||||||  |||||||||    
T  1301858 atgtctctgcaatttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatcacggg 1301957  T
Q  132 tttgtcattcaatccggaaatgaccttgaacggccacaacttcat 176  Q
    |||||||||||  ||||  ||||||||||| ||||||||| ||||    
T  1301958 tttgtcattcacaccggcgatgaccttgaatggccacaacatcat 1302002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 171
Target Start/End: Original strand, 8667821 - 8667952
Alignment:
Q  40 gcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtcat 139  Q
    |||| ||| ||||||||||| || | |||||| |||||||| || ||||| | ||||||||| || |||||||||||||||| |||||  ||||||||||    
T  8667821 gcaacctctcgcatctttgtaagcaccatagaagatatttcctcagcacaaaagtgcttctcttgacccttgtacttaacagtaatcataggtttgtcat 8667920  T
Q  140 tcaatccggaaatgaccttgaacggccacaac 171  Q
    | |  || ||||| |||||||| |||||||||    
T  8667921 taacaccagaaataaccttgaatggccacaac 8667952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 7877531 - 7877419
Alignment:
Q  8 cattcttgacaggaaattgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcc 107  Q
    |||||||||||||  | | ||||||  ||||||||||||| ||||||||||| || ||||| ||||||||||| |||||||| | |||||| ||||  ||    
T  7877531 cattcttgacaggtgactccaaaaacttctctgcaatctcgcgcatctttgtaaggatcatggatgatatttcctcggcacaaaagtgcttttcctcgcc 7877432  T
Q  108 cttgtacttaaca 120  Q
    ||| |||||||||    
T  7877431 cttatacttaaca 7877419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 27 - 171
Target Start/End: Complemental strand, 8585485 - 8585341
Alignment:
Q  27 caaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatc 126  Q
    |||| |||||||||||||||    ||| ||||| || || |||||||||||||| || |||||||||| ||| || || |||||||||||||||| ||||    
T  8585485 caaatatgtctctgcaatcttcttcatgtttgtgaggatgatagatgatatttcctcagcacataggttcttttcttgacccttgtacttaacagtaatc 8585386  T
Q  127 acgggtttgtcattcaatccggaaatgaccttgaacggccacaac 171  Q
    |  ||||||||||| |  || || || |||||||| |||||||||    
T  8585385 ataggtttgtcattaacaccagagataaccttgaatggccacaac 8585341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 8654848 - 8654952
Alignment:
Q  36 ctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttg 135  Q
    |||||||||||| ||||||||||| |||| |  |||||||||||| || ||||| |  |||||||| || || ||||||||||||| ||||| |||||||    
T  8654848 ctctgcaatctctcgcatctttgtaagaaccgcagatgatatttcctcagcacaaaattgcttctcttgacctttgtacttaacagtaatcatgggtttg 8654947  T
Q  136 tcatt 140  Q
    |||||    
T  8654948 tcatt 8654952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 27 - 171
Target Start/End: Complemental strand, 10494153 - 10494009
Alignment:
Q  27 caaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatc 126  Q
    |||| ||| |||||||| ||| ||||||||| | || | ||||||||||||||| |||||||| | ||||||||| || |||||||||||| | | ||||    
T  10494153 caaatatgcctctgcaacctctcgcatctttataaggaccatagatgatatttcctcggcacaaaagtgcttctcttgacccttgtacttagcggtaatc 10494054  T
Q  127 acgggtttgtcattcaatccggaaatgaccttgaacggccacaac 171  Q
    |  ||||||||||| |  || ||| | |||||||| |||||||||    
T  10494053 ataggtttgtcattgacacctgaagtaaccttgaatggccacaac 10494009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 8628961 - 8629061
Alignment:
Q  67 atagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggcc 166  Q
    |||||||||||||| || |||||||||| |||||| || |||||||||||||||| |||||  || |||||||| |  || ||||| |||||||| ||||    
T  8628961 atagatgatatttcctcagcacataggttcttctcttgacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggcc 8629060  T
Q  167 a 167  Q
    |    
T  8629061 a 8629061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 176
Target Start/End: Original strand, 8659757 - 8659901
Alignment:
Q  32 atgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacggg 131  Q
    ||||||||||||  || ||||| ||||| || | ||||||||||||||| || ||||| | |||||||||||| |||||||||| ||||  ||||| | |    
T  8659757 atgtctctgcaacttctcgcatttttgtaagtaccatagatgatatttcctccgcacaaaagtgcttctcctgacccttgtactgaacattaatcatgag 8659856  T
Q  132 tttgtcattcaatccggaaatgaccttgaacggccacaacttcat 176  Q
    |||||| ||||  || |  || |||||||| ||||||||| ||||    
T  8659857 tttgtcgttcacaccagcgataaccttgaatggccacaacatcat 8659901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 35 - 176
Target Start/End: Complemental strand, 8640317 - 8640179
Alignment:
Q  35 tctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggttt 134  Q
    ||||||||| ||| |||||||| |  || ||||||||||||||||| |||||||| |   ||||||| |  |||||||| ||||||  ||||  ||||||    
T  8640317 tctctgcaacctctcgcatcttcgaaaggatcatagatgatatttcctcggcacaaaaacgcttctcttcacccttgtatttaacaataatcgtgggttt 8640218  T
Q  135 gtcattcaatccggaaatgaccttgaacggccacaacttcat 176  Q
    ||||||||  ||   |||||||||||| ||||||||||||||    
T  8640217 gtcattcacccc---aatgaccttgaatggccacaacttcat 8640179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 13333226 - 13333145
Alignment:
Q  36 ctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtactta 117  Q
    |||||||| ||| ||||||||||| || | ||||||||||||||| |||||||| | ||||||||| || |||||| |||||    
T  13333226 ctctgcaacctctcgcatctttgtaaggaccatagatgatatttcctcggcacaaaagtgcttctcttgacccttgcactta 13333145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 17268341 - 17268469
Alignment:
Q  40 gcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtcat 139  Q
    |||||||| ||||||||||| || | |||||| || ||||| || ||||| | ||| |||||| ||||||||||||| |  |||||||  ||||||||||    
T  17268341 gcaatctcccgcatctttgtgagtaccatagacgaaatttcctctgcacaaaagtgtttctcccgtcccttgtacttgagggaaatcattggtttgtcat 17268440  T
Q  140 tca-atccggaaatgaccttgaacggccac 168  Q
    ||| |||| | |||||||||||| ||||||    
T  17268441 tcatatcc-gcaatgaccttgaatggccac 17268469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 8559722 - 8559782
Alignment:
Q  27 caaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggca 87  Q
    ||||||||  ||||||||||| ||||||| ||| |||||||||| ||||||||||||||||    
T  8559722 caaaaatgcttctgcaatctctcgcatctgtgtgagaatcatagctgatatttcttcggca 8559782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 29581639 - 29581567
Alignment:
Q  8 cattcttgacaggaaattgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttc 80  Q
    ||||||| ||||| |||| ||||||| |||||||||| ||| |||||||||  || |||||||||||||||||    
T  29581639 cattctttacaggcaattccaaaaatttctctgcaatatcatgcatctttgagaggatcatagatgatatttc 29581567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 8570681 - 8570756
Alignment:
Q  8 cattcttgacaggaaattgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttc 83  Q
    ||||||| |||||| | | ||||||||  ||||||||||| ||||||||||  ||||||| |||||||||||||||    
T  8570681 cattcttaacaggagactccaaaaatgcttctgcaatctctcgcatctttgagagaatcacagatgatatttcttc 8570756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 8382647 - 8382562
Alignment:
Q  35 tctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaaca 120  Q
    ||||||||||||||||||||||| | || | |||||| || ||||| |||||||| ||||| || ||||  ||||| |||||||||    
T  8382647 tctctgcaatctcacgcatctttttgaggaccatagaggagatttcctcggcacaaaggtgtttttcctcacccttatacttaaca 8382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 27830658 - 27830561
Alignment:
Q  23 attgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaaca 120  Q
    |||||||| ||| ||| || ||||| ||||||||||| || | ||| ||||| ||||| || ||||||| ||| |||||||| | |||||||||||||    
T  27830658 attgcaaatatgcctccgcgatctctcgcatctttgtaaggaccattgatgaaatttcctccgcacataagtgtttctcctgactcttgtacttaaca 27830561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 8546021 - 8546165
Alignment:
Q  27 caaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatc 126  Q
    |||||||| |||||||||||| ||||||| ||  || |||| ||||||||||||||| |||   | |||||| ||||  |||||||| || |||  |||     
T  8546021 caaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcacccttgtagttcacaagaatt 8546120  T
Q  127 acgggtttgtcattcaatccggaaatgaccttgaacggccacaac 171  Q
       ||||||||||| |  |||||||||||||| || |||||||||    
T  8546121 gtcggtttgtcattaacaccggaaatgaccttaaagggccacaac 8546165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 8582089 - 8582145
Alignment:
Q  27 caaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttc 83  Q
    |||||||| |||||||||||| ||||||| ||| ||||| | |||||||||||||||    
T  8582089 caaaaatgcctctgcaatctctcgcatctgtgtcagaataacagatgatatttcttc 8582145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 6789899 - 6790050
Alignment:
Q  25 tgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaa 124  Q
    |||||| || |||| |||||||| |||||||| || || |||||||| || | ||| ||  ||||||| ||||||||||  ||||| |||| ||||  ||    
T  6789899 tgcaaatatttctcagcaatctcccgcatcttggtgaggatcatagacgaaacttcctcaacacatagttgcttctcctcacccttatactcaacaacaa 6789998  T
Q  125 tcacgggtttgtcattcaatccggaaatgaccttgaacggccacaacttcat 176  Q
    ||| ||| |||||||| |  || | |||||||||||| ||||| ||| ||||    
T  6789999 tcatgggcttgtcattgacgccagcaatgaccttgaatggccaaaacatcat 6790050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 8576724 - 8576771
Alignment:
Q  36 ctctgcaatctcacgcatctttgttagaatcatagatgatatttcttc 83  Q
    |||||||||||| ||||||||||  ||||||| |||||||||||||||    
T  8576724 ctctgcaatctctcgcatctttgagagaatcacagatgatatttcttc 8576771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 8591040 - 8591120
Alignment:
Q  40 gcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaaca 120  Q
    |||||||| ||||||||||| |||| ||| ||||| ||||| || ||||| ||  |||| ||||  |||||||||||||||    
T  8591040 gcaatctctcgcatctttgtgagaaccatggatgagatttcctccgcacaaagacgcttttcctcacccttgtacttaaca 8591120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 171
Target Start/End: Complemental strand, 8671396 - 8671265
Alignment:
Q  40 gcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtcat 139  Q
    |||| ||| ||||||||||| || | |||||| |||||||| || ||||| |  ||||||||  | || | |||||| |||| |||||  ||||||||||    
T  8671396 gcaacctctcgcatctttgtaagcaccatagaagatatttcctcagcacaaaattgcttctctagaccttcgtacttgacagtaatcataggtttgtcat 8671297  T
Q  140 tcaatccggaaatgaccttgaacggccacaac 171  Q
    | |  || ||||| |||||||| |||||||||    
T  8671296 taacaccagaaataaccttgaatggccacaac 8671265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 168
Target Start/End: Original strand, 17260669 - 17260771
Alignment:
Q  66 catagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtcattca-atccggaaatgaccttgaacgg 164  Q
    |||||| || ||||| || ||||| | ||| |||||| ||||||||||||| |  |||||||  ||||||||||||| |||| | |||||||||||| ||    
T  17260669 catagacgagatttcctctgcacaaaagtgtttctcccgtcccttgtacttgagggaaatcattggtttgtcattcatatcc-gcaatgaccttgaatgg 17260767  T
Q  165 ccac 168  Q
    ||||    
T  17260768 ccac 17260771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 28910952 - 28911115
Alignment:
Q  8 cattcttgacaggaaattgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcc 107  Q
    |||||||||| || |||| |||||||||| |||||||||| || |||||||  |||| || |||||| ||||| || |||||||  | |||||||||  |    
T  28910952 cattcttgacgggcaattccaaaaatgtcactgcaatctcgcgaatctttgagagaaccacagatgagatttcctcagcacataatttcttctcctgatc 28911051  T
Q  108 cttgtacttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggccacaac 171  Q
    ||||||||| ||||| |||| ||| |||||||| |  |||| |||||||||||||||| |||||    
T  28911052 cttgtacttgacagatatcatggggttgtcattgacaccggcaatgaccttgaacggcgacaac 28911115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 12245172 - 12245045
Alignment:
Q  40 gcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtcat 139  Q
    ||||| || |||||||||||||| | ||||||||||| |||||| |||||||| ||||||||||| || ||||| ||||||| ||| |  ||||||||||    
T  12245172 gcaatttctcgcatctttgttagtaccatagatgatacttcttcagcacatagctgcttctcctggcctttgtagttaacagtaattattggtttgtcat 12245073  T
Q  140 tcaatccggaaatgaccttgaacggcca 167  Q
    | |  || | | ||||||||||||||||    
T  12245072 tgacaccagcagtgaccttgaacggcca 12245045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 11999796 - 11999896
Alignment:
Q  40 gcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtcat 139  Q
    ||||| || |||||||| ||||| | ||||||||||| |||||| |||||||| ||||||||||| || ||||||||||||| ||| |  ||||||||||    
T  11999796 gcaatttctcgcatcttcgttagtaccatagatgatacttcttcagcacatagctgcttctcctggcctttgtacttaacagtaattattggtttgtcat 11999895  T
Q  140 t 140  Q
    |    
T  11999896 t 11999896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 12235059 - 12235191
Alignment:
Q  8 cattcttgacaggaaattgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcc 107  Q
    ||||||| || |||||||| ||| ||| ||| || || || ||||||||||| || | ||||||||||| |||||||| |||||| ||||||||  | ||    
T  12235059 cattcttaactggaaattgtaaatatgcctcagcgatttctcgcatctttgtgagtaccatagatgatacttcttcgggacatagctgcttctctcgacc 12235158  T
Q  108 cttgtacttaacagaaatcacgggtttgtcatt 140  Q
    ||||||||| |||  ||||| ||||||||||||    
T  12235159 cttgtacttgacaataatcatgggtttgtcatt 12235191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 16657315 - 16657153
Alignment:
Q  8 cattcttgacaggaaattgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcc 107  Q
    |||||||||||||  | | || ||||| ||| ||||  || ||||||||||| || ||||||||||||||||| || ||||| |  ||  |||| || ||    
T  16657315 cattcttgacaggcgactccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaaattggctctcttgacc 16657216  T
Q  108 cttgtacttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggccacaa 170  Q
    ||| |||| || || |||||  ||||||||||||| ||||| |||||||||||| ||||||||    
T  16657215 cttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggccacaa 16657153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 16661731 - 16661627
Alignment:
Q  67 atagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggcc 166  Q
    |||||||| ||||| |||||||| ||| |||||||||| |||||||||||||||  ||||   ||||||||||| |  || | ||| |||||||||||||    
T  16661731 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 16661632  T
Q  167 acaac 171  Q
    |||||    
T  16661631 acaac 16661627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 14703836 - 14703909
Alignment:
Q  66 catagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtcat 139  Q
    ||||||||||| |||||||||| | || | |||||||||  ||||||||||||| | ||||| |||||||||||    
T  14703836 catagatgatacttcttcggcatagagcttcttctcctgatccttgtacttaaccgtaatcatgggtttgtcat 14703909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 43625803 - 43625855
Alignment:
Q  28 aaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttc 80  Q
    |||||| ||||||||| ||| ||||||||||| || |||||||| ||||||||    
T  43625803 aaaaatttctctgcaacctctcgcatctttgtgaggatcatagacgatatttc 43625855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 15595429 - 15595571
Alignment:
Q  28 aaaaatgtctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatca 127  Q
    |||||| ||||||||| ||| ||||||||| | ||||||||||| |||||||| || ||||| | | |||| || || |||||||| ||||||  |||||    
T  15595429 aaaaatttctctgcaacctctcgcatctttttgagaatcatagacgatatttcctcagcacaaaagcgcttttcttgacccttgtatttaacaataatca 15595528  T
Q  128 cgggtttgtcattcaatccggaaatgaccttgaacggccacaactt 173  Q
     ||||||||||||||  ||   |||||||||||| |||||||||||    
T  15595529 tgggtttgtcattcacacc---aatgaccttgaatggccacaactt 15595571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 34466563 - 34466459
Alignment:
Q  36 ctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttg 135  Q
    ||||||| | || ||||||||||  || ||||||||||| ||||| || |||||||||||||||||||| ||||| |||||||  |||||||  || |||    
T  34466563 ctctgcagtatcccgcatctttgaaaggatcatagatgagatttcctcagcacataggtgcttctcctgacccttatacttaagggaaatcattggcttg 34466464  T
Q  136 tcatt 140  Q
    |||||    
T  34466463 tcatt 34466459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 171
Target Start/End: Complemental strand, 9335646 - 9335526
Alignment:
Q  51 catctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtcattcaatccggaa 150  Q
    ||||||||| || | |||||| |||||||| || ||||| | ||||||||| || |||||||| ||||||| |||||  ||||||||||| |  || |||    
T  9335646 catctttgtaagcaacatagaagatatttcctcagcacaaaagtgcttctcttgacccttgtagttaacagtaatcataggtttgtcattaacaccagaa 9335547  T
Q  151 atgaccttgaacggccacaac 171  Q
    || |||||||| |||||||||    
T  9335546 ataaccttgaatggccacaac 9335526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 30775649 - 30775785
Alignment:
Q  35 tctctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggttt 134  Q
    ||||||||||||| | ||| ||||| || |  || ||||| ||||| |||||||| ||| | |||||||| |||||| ||||||  ||||||| ||||||    
T  30775649 tctctgcaatctctctcatatttgtgaggactattgatgaaatttcctcggcacagaggagtttctcctggcccttgaacttaagggaaatcatgggttt 30775748  T
Q  135 gtcattcaatccggaaatgaccttgaacggccacaac 171  Q
    |||||| |  || ||||  |||||||| |||||||||    
T  30775749 gtcattaacaccagaaacaaccttgaatggccacaac 30775785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 35132846 - 35132975
Alignment:
Q  38 ctgcaatctcacgcatctttgttagaatcatagatgatatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtc 137  Q
    ||||||| || ||||||||||| || | ||| ||||||| |||||| ||| | || ||||| ||||   ||||||||||||| | ||||| |||||||||    
T  35132846 ctgcaatttctcgcatctttgtgagtaccatggatgatacttcttccgcatagagttgcttttcctcatccttgtacttaaccgtaatcatgggtttgtc 35132945  T
Q  138 attcaatccggaaatgaccttgaacggcca 167  Q
    ||| |  |||| | |||||||||| |||||    
T  35132946 atttacaccggcagtgaccttgaatggcca 35132975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University