View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5811-11 (Length: 161)
Name: Solexa-NF5811-11
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-11 |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 2e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 2e-78
Query Start/End: Original strand, 6 - 161
Target Start/End: Complemental strand, 24455987 - 24455832
Alignment:
| Q |
6 |
agagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaacc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
24455987 |
agagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgctgttgcattacattagtccacatgccgaaaacc |
24455888 |
T |
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| Q |
106 |
agctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaatt |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24455887 |
agctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaatt |
24455832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 9e-53
Query Start/End: Original strand, 6 - 154
Target Start/End: Original strand, 1615106 - 1615254
Alignment:
| Q |
6 |
agagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaacc |
105 |
Q |
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||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| |
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| T |
1615106 |
agagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaacc |
1615205 |
T |
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| Q |
106 |
agctctaaattatgcagaaaatcacctcgatctcgctccaaattatgca |
154 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
1615206 |
agctctaaattatgcagaaaatcacctcgatctctctccaaactatgca |
1615254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 4e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 4e-58
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 49233817 - 49233966
Alignment:
| Q |
12 |
aaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaaccagctct |
111 |
Q |
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|||||| |||| |||||||||| ||| |||||| |||||||||| | ||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
49233817 |
aaatcaaaacacagggaggaaagaatgccactatgtagcagctgtagtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctct |
49233916 |
T |
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| Q |
112 |
aaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaatt |
161 |
Q |
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| T |
49233917 |
aaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaatt |
49233966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 49234388 - 49234538
Alignment:
| Q |
12 |
aaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaaccagctct |
111 |
Q |
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||||||||||| |||||||||||||| |||||| |||||||||||| ||||||||||||| || |||| |||||||| |||||||| ||||||||||||| |
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| T |
49234388 |
aaatcagaacacagggaggaaaaaatgccactatgtagcagctgcagtaccaaaacactgctgctgcattacattagcccacatgcagaaaaccagctct |
49234487 |
T |
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| Q |
112 |
aaattatgc-agaaaatcacctcgatctcgctccaaattatgcagaaaatt |
161 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
49234488 |
aaattatgcaagaaaatcacctcgatctcgctccaaattatgcataaaatt |
49234538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 9e-50; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 9e-50
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 50862660 - 50862513
Alignment:
| Q |
12 |
aaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaaccagctct |
111 |
Q |
| |
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||||||||||| ||||||||||||| |||||| ||| |||||||| ||||||| || || || | |||||||||||||||||||||||||| ||||||| |
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| T |
50862660 |
aaatcagaacacagggaggaaaaaacgccactatgtaccagctgcagtaccaaagcagtgctgatacactacattagtccacatgccgaaaatcagctct |
50862561 |
T |
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| Q |
112 |
aaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaa |
159 |
Q |
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| T |
50862560 |
aaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaa |
50862513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 47724037 - 47723980
Alignment:
| Q |
101 |
aaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaa |
158 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47724037 |
aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgcagaaa |
47723980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 47731029 - 47730972
Alignment:
| Q |
101 |
aaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaa |
158 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47731029 |
aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgcagaaa |
47730972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 1380397 - 1380336
Alignment:
| Q |
100 |
aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaatt |
161 |
Q |
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|||| ||||||| || ||||||||| || ||||||| | |||||||||||||| |||||||| |
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| T |
1380397 |
aaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaatt |
1380336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 7313584 - 7313523
Alignment:
| Q |
100 |
aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaatt |
161 |
Q |
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|||| ||||||| || ||||||||| || ||||||| | |||||||||||||| |||||||| |
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| T |
7313584 |
aaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaatt |
7313523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 1e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 6 - 161
Target Start/End: Complemental strand, 43228223 - 43228068
Alignment:
| Q |
6 |
agagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaacc |
105 |
Q |
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||||| |||||||||| ||||||||||||| |||| | |||| ||||||| | | ||||||||| || ||||||||||||||||||||||||||| || |
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| T |
43228223 |
agagacaaatcagaacgcagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagcc |
43228124 |
T |
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| Q |
106 |
agctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaatt |
161 |
Q |
| |
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| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
43228123 |
aactctaaattatgcagaaaatcaccccgatctcactccaaattatgcagaaaatt |
43228068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 14839257 - 14839131
Alignment:
| Q |
6 |
agagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaacc |
105 |
Q |
| |
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||||| |||||||||| |||||||||||||| || ||||||||||| |||| ||||||||||| | | |||| |||||||||||| |||| ||||||| |
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| T |
14839257 |
agagacaaatcagaacgtagggaggaaaaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaacc |
14839158 |
T |
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| Q |
106 |
agctctaaattatgcagaaaatcacct |
132 |
Q |
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||||||||| |||| |||||| |||| |
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| T |
14839157 |
agctctaaactatgtcgaaaattacct |
14839131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 6e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 27962433 - 27962559
Alignment:
| Q |
6 |
agagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgatgttgcactacattagtccacatgccgaaaacc |
105 |
Q |
| |
|
||||| |||||||||| |||||||||||||| || ||||||||||| |||| ||||||||||| | | |||| |||||||||||| |||| ||||||| |
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| T |
27962433 |
agagacaaatcagaacgtagggaggaaaaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaacc |
27962532 |
T |
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| Q |
106 |
agctctaaattatgcagaaaatcacct |
132 |
Q |
| |
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||||||||| |||| |||||| |||| |
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| T |
27962533 |
agctctaaactatgtcgaaaattacct |
27962559 |
T |
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