View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5811-12 (Length: 159)
Name: Solexa-NF5811-12
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-12 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 4e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 4e-70
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 1255091 - 1254942
Alignment:
| Q |
9 |
ttcctacggttgttcttgagcatttagaaaaggctcttcaggttaatgactcactcattcatataaaatctgaactcgttttaaaattgttgttatagca |
108 |
Q |
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| T |
1255091 |
ttcctacggttgttcttgagcatttagaaaaggctcttcaggttaatgacccactctttcatataaaatctgaactcgttttaaatttgttgttatacca |
1254992 |
T |
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| Q |
109 |
aaaattgttttaaatttttacccaaaaaattgctttagtcacacattcat |
158 |
Q |
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| T |
1254991 |
aaaattgttttaaatttttacccaaaaaattgctttagtcacacattcat |
1254942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 1244359 - 1244210
Alignment:
| Q |
9 |
ttcctacggttgttcttgagcatttagaaaaggctcttcaggttaatgactcactcattcatataaaatctgaactcgttttaaaattgttgttatagca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||| |||| || |
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| T |
1244359 |
ttcctacggttgttcttgagcatttagaaaaggctcttcaggttaatgacccactcattcatataaaatctgaacttgttttaaatttgttgctatacca |
1244260 |
T |
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| Q |
109 |
aaaattgttttaaatttttacccaaaaaattgctttagtcacacattcat |
158 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1244259 |
aaacttgttttaaatttttacccaaaaaattgctttagtcacacattcat |
1244210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 1229904 - 1229837
Alignment:
| Q |
9 |
ttcctacggttgttcttgagcatttagaaaaggctcttcaggttaatgactcactcattcatataaaa |
76 |
Q |
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|||||||||||||||||||| | || ||| ||||||||||||| |||||| ||||||||||||||||| |
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| T |
1229904 |
ttcctacggttgttcttgaggacttggaacaggctcttcaggtcaatgacccactcattcatataaaa |
1229837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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