View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5811-19 (Length: 144)

Name: Solexa-NF5811-19
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5811-19
Solexa-NF5811-19
[»] chr7 (7 HSPs)
chr7 (11-139)||(23417151-23417279)
chr7 (9-130)||(35759797-35759918)
chr7 (7-130)||(19625479-19625602)
chr7 (7-130)||(12633486-12633612)
chr7 (11-116)||(261707-261812)
chr7 (11-80)||(29428975-29429044)
chr7 (11-130)||(36657546-36657665)
[»] scaffold0110 (1 HSPs)
scaffold0110 (11-139)||(38508-38636)
[»] chr2 (6 HSPs)
chr2 (7-139)||(44246393-44246525)
chr2 (11-109)||(28219084-28219183)
chr2 (7-130)||(28199158-28199281)
chr2 (10-115)||(1499181-1499286)
chr2 (11-94)||(17999928-18000010)
chr2 (7-95)||(10354317-10354405)
[»] chr1 (12 HSPs)
chr1 (11-133)||(42365948-42366070)
chr1 (53-139)||(50678087-50678173)
chr1 (11-109)||(42934285-42934383)
chr1 (11-94)||(41404134-41404217)
chr1 (11-92)||(15581632-15581713)
chr1 (7-95)||(48046460-48046548)
chr1 (10-95)||(39793642-39793727)
chr1 (11-95)||(34969841-34969924)
chr1 (7-79)||(42117145-42117217)
chr1 (7-79)||(49741377-49741449)
chr1 (64-128)||(7521239-7521303)
chr1 (11-43)||(50678166-50678198)
[»] chr3 (11 HSPs)
chr3 (11-131)||(27011247-27011368)
chr3 (7-130)||(25045434-25045557)
chr3 (7-130)||(32278420-32278543)
chr3 (11-109)||(42029249-42029348)
chr3 (18-113)||(40024811-40024906)
chr3 (7-95)||(39439839-39439927)
chr3 (7-109)||(25909404-25909507)
chr3 (11-89)||(24374193-24374271)
chr3 (18-130)||(44713298-44713409)
chr3 (7-130)||(42957265-42957387)
chr3 (7-79)||(14567906-14567978)
[»] chr5 (6 HSPs)
chr5 (7-130)||(30084962-30085085)
chr5 (11-109)||(4943593-4943692)
chr5 (11-95)||(5247872-5247956)
chr5 (7-95)||(11617296-11617384)
chr5 (7-79)||(32233065-32233137)
chr5 (42-95)||(29293260-29293312)
[»] chr4 (12 HSPs)
chr4 (7-95)||(22405098-22405187)
chr4 (7-130)||(35033761-35033884)
chr4 (7-105)||(46944108-46944206)
chr4 (11-109)||(21263547-21263646)
chr4 (10-91)||(31227763-31227843)
chr4 (10-95)||(50859232-50859317)
chr4 (7-95)||(35292107-35292195)
chr4 (7-79)||(26861354-26861426)
chr4 (22-94)||(41809872-41809944)
chr4 (10-109)||(55841422-55841522)
chr4 (10-69)||(55777242-55777301)
chr4 (7-95)||(48084744-48084832)
[»] scaffold0224 (1 HSPs)
scaffold0224 (11-109)||(12388-12486)
[»] scaffold0127 (1 HSPs)
scaffold0127 (11-94)||(30118-30201)
[»] chr8 (3 HSPs)
chr8 (12-139)||(28873646-28873776)
chr8 (7-93)||(38679803-38679888)
chr8 (7-79)||(11354830-11354902)
[»] chr6 (1 HSPs)
chr6 (11-85)||(10871290-10871364)
[»] scaffold0022 (2 HSPs)
scaffold0022 (11-94)||(44099-44182)
scaffold0022 (11-94)||(77820-77903)
[»] scaffold0039 (1 HSPs)
scaffold0039 (12-95)||(56983-57066)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 6e-60; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 6e-60
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 23417279 - 23417151
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaatttta 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  23417279 cattccatccaataccactcattcttccaatttttcattccatccaatttggggtgtatccaatggaatggaacacattaataattttattacaatttta 23417180  T
Q  111 tccctacattttctatttcaccttcttct 139  Q
    ||||| |||||||||||||||||||||||    
T  23417179 tccctgcattttctatttcaccttcttct 23417151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 35759797 - 35759918
Alignment:
Q  9 ctcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaattt 108  Q
    |||||||||||||||||||||||||| | |||||||| || ||  ||||  ||| |||||| || |||||||||||||||||||||||  ||||||||||    
T  35759797 ctcattccatccaataccactcattcattcaatttttaatccctcccaaactggggtgtatgcaatggaatggaacacattaataattcaattacaattt 35759896  T
Q  109 tatccctacattttctatttca 130  Q
    |||||| || ||||||||||||    
T  35759897 tatcccaactttttctatttca 35759918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 19625479 - 19625602
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaat 106  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||  |||| |||  ||||||||| ||| |||||||||||||||||    |||||| |    
T  19625479 aactaattccatccaataccactcattcatccaattttccattcctcccaaattgtggtgtatccaatgggatggaacacattaataaccgaattacatt 19625578  T
Q  107 tttatccctacattttctatttca 130  Q
    |||||||||||  |||||||||||    
T  19625579 tttatccctactatttctatttca 19625602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 12633486 - 12633612
Alignment:
Q  7 aactcattccatc---caataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattac 103  Q
    |||||||||||||   ||||||||||||||   |||||||| ||||||  |||| || | ||||||||| ||||||| || |||||||||||   |||||    
T  12633486 aactcattccatcgaccaataccactcatttagccaattttccattcctcccaaattagggtgtatccaatggaatgaaatacattaataatacaattac 12633585  T
Q  104 aattttatccctacattttctatttca 130  Q
    ||||||  |||||  ||||||||||||    
T  12633586 aattttgaccctattttttctatttca 12633612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 261812 - 261707
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaatttta 110  Q
    ||||||||| ||||| |||||||    ||||||| ||||||   |||||||| ||||||||| || ||||||||||||||||||    |||||||||||     
T  261812 cattccatcaaatacaactcatttactcaattttccattcccctcaatttggggtgtatccaatgaaatggaacacattaataacacaattacaattttg 261713  T
Q  111 tcccta 116  Q
    ||||||    
T  261712 tcccta 261707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 29428975 - 29429044
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatg 80  Q
    |||||||||| ||| |||||  ||||||||||| ||||||| |||||||||| |||||| || |||||||    
T  29428975 cattccatcccatagcactctctcttccaatttatcattccctccaatttggggtgtatgcaatggaatg 29429044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 36657665 - 36657546
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaatttta 110  Q
    ||||||||||||||||| |||||   |||  |||||| |||| ||||||||| ||||||||| |||||| ||| | |||  ||||   || ||||||||     
T  36657665 cattccatccaataccattcatttaaccagattttcaatccacccaatttggggtgtatccaatggaatcgaaaatattgttaatacaatcacaattttg 36657566  T
Q  111 tccctacattttctatttca 130  Q
     |||||| ||||||||||||    
T  36657565 cccctaccttttctatttca 36657546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 113; Significance: 1e-57; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 38636 - 38508
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaatttta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||| |||||||||||||||||||||||||||||||||||||    
T  38636 cattccatccaataccactcattcttccaatttttcattccattcaatttgggatgtatccaatggaatggaacacattaataattttattacaatttta 38537  T
Q  111 tccctacattttctatttcaccttcttct 139  Q
    |||||||||||||||||||||||||||||    
T  38536 tccctacattttctatttcaccttcttct 38508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 3e-55; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 44246393 - 44246525
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaat 106  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  44246393 aactcattccatccaataccactcattctttcaatttttcattccatccaatttggggtgtatccaatggaatggaacacattaatacttttattacaat 44246492  T
Q  107 tttatccctacattttctatttcaccttcttct 139  Q
    ||||||||| ||||||||||||||||| |||||    
T  44246493 tttatccctgcattttctatttcacctccttct 44246525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 28219084 - 28219183
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaa-cacattaataattttattacaatttt 109  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||||| |||||||||| |||||||||||| | ||||| |||||    
T  28219084 cattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaatggaaccacattaataatataattaccatttt 28219183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 28199281 - 28199158
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaat 106  Q
    |||| ||||||||||||||||||||||| | ||||||| ||||||  |||| |||| ||||||||| ||| |||||||||||||||||    |||||| |    
T  28199281 aacttattccatccaataccactcattcattcaattttccattcctcccaaattggggtgtatccaatgggatggaacacattaataacccaattacatt 28199182  T
Q  107 tttatccctacattttctatttca 130  Q
    |||||||||||  |||||||||||    
T  28199181 tttatccctactatttctatttca 28199158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 1499286 - 1499181
Alignment:
Q  10 tcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaatttt 109  Q
    |||||||||||||||||| ||||||  ||||||||| ||| |  ||||||||  ||||||||| ||||||||||  |||| |||||   |||||||||||    
T  1499286 tcattccatccaataccaatcattcaaccaattttttatttcccccaatttgaggtgtatccaatggaatggaatgcatttataatacaattacaatttt 1499187  T
Q  110 atccct 115  Q
     |||||    
T  1499186 gtccct 1499181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 18000010 - 17999928
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataa 94  Q
    ||||| |||||||||||||||||   |||| |||||| ||| |||||||||| ||||||||  |||||||||| ||||||||||    
T  18000010 cattctatccaataccactcattaagccaaattttca-tccctccaatttggggtgtatccgatggaatggaatacattaataa 17999928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 10354317 - 10354405
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataat 95  Q
    |||||||||||||||||||||| ||||   |||| ||||||||||  |||| ||   ||||||||| |||||||||| |||| ||||||    
T  10354317 aactcattccatccaataccacccattaagccaaattttcattccccccaaattaaggtgtatccaatggaatggaatacataaataat 10354405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 1e-51; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 42365948 - 42366070
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaatttta 110  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  42365948 cattccatccaataccattcattcttccaatttttcattccatctaatttggggtgtatccaatggaatggaacacattaataattttattacaatttta 42366047  T
Q  111 tccctacattttctatttcacct 133  Q
    ||||| |||||||||||||||||    
T  42366048 tccctgcattttctatttcacct 42366070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 50678173 - 50678087
Alignment:
Q  53 tccaatttggagtgtatccagtggaatggaacacattaataattttattacaattttatccctacattttctatttcaccttcttct 139  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50678173 tccaatttggggtgtatccaatggaatggaacacattaataattttattacaattttatccctgcattttctatttcaccttcttct 50678087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 42934285 - 42934383
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaatttt 109  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||||||||  ||||||||| | ||||||||||||| |||||| | ||||| |||||    
T  42934285 cattccatccaataccactcattccttcaattttccattccatccaatttgaggtgtatccaatagaatggaacacatcaataatataattaccatttt 42934383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 41404134 - 41404217
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataa 94  Q
    |||||||||  ||||||||||||| ||||||||| ||||||  ||||||||| ||||||||| || ||||||||||||||||||    
T  41404134 cattccatcatataccactcattcatccaattttccattccccccaatttggggtgtatccaatgaaatggaacacattaataa 41404217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 15581632 - 15581713
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaat 92  Q
    |||||||||||||||||  |||||| |||||||| ||||||  ||||||||| ||||||||| |||||||||||||| ||||    
T  15581632 cattccatccaataccatccattctcccaattttccattccccccaatttggggtgtatccaatggaatggaacacaataat 15581713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 48046460 - 48046548
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataat 95  Q
    |||||||||||||||||||||| ||||   |||| ||||||||||  | ||||||| ||||||||| |||||||||| |||| ||||||    
T  48046460 aactcattccatccaataccacccattaagccaaattttcattccccctaatttggggtgtatccaatggaatggaatacataaataat 48046548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 39793642 - 39793727
Alignment:
Q  10 tcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataat 95  Q
    |||||||||||||||  |||||||    |||||||||||||| || ||||| | ||||||||| || |||||||||||||||||||    
T  39793642 tcattccatccaataaaactcatttagtcaatttttcattccttctaatttagggtgtatccaatgaaatggaacacattaataat 39793727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 34969841 - 34969924
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataat 95  Q
    |||||||||||||||||||||||    ||| |||||||||| |||||||||| ||||||| | |||||| ||| |||||||||||    
T  34969841 cattccatccaataccactcattaagtcaaattttcattcc-tccaatttggggtgtatcaaatggaatagaatacattaataat 34969924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 42117217 - 42117145
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaat 79  Q
    |||||||||||||||||||||| ||  | | |||||||||||||| ||||| |||| ||||||||| ||||||    
T  42117217 aactcattccatccaataccacccaaaccttcaatttttcattccctccaaattggggtgtatccaatggaat 42117145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 49741377 - 49741449
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaat 79  Q
    |||||||||||||||||||||| ||  | | |||||||||||||| | ||| |||| ||||||||| ||||||    
T  49741377 aactcattccatccaataccacccaaaccttcaatttttcattcccttcaaattggggtgtatccaatggaat 49741449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 7521239 - 7521303
Alignment:
Q  64 gtgtatccagtggaatggaacacattaataattttattacaattttatccctacattttctattt 128  Q
    |||||| || |||||||||||||||||||||    ||||||||||| ||||||  ||||||||||    
T  7521239 gtgtattcaatggaatggaacacattaataacacaattacaattttgtccctattttttctattt 7521303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 50678198 - 50678166
Alignment:
Q  11 cattccatccaataccactcattcttccaattt 43  Q
    ||||| |||||||||||||||||||||||||||    
T  50678198 cattctatccaataccactcattcttccaattt 50678166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 1e-48; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 27011247 - 27011368
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattac-aatttt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  27011247 cattccatccaataccactcattcttccaatttttcattccatccaatttggggtgtatccaatggaatgaaacacattaataattttattacaaatttt 27011346  T
Q  110 atccctacattttctatttcac 131  Q
    |||||| |||||||||||||||    
T  27011347 atccctgcattttctatttcac 27011368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 25045434 - 25045557
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaat 106  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||  |||| |||| ||||||||| ||||||||||||||||||||| |  |||||| |    
T  25045434 aactcattccatccaataccactcattcatccaattttccattcctcccaaattggtgtgtatccaatggaatggaacacattaataactcaattacatt 25045533  T
Q  107 tttatccctacattttctatttca 130  Q
    |||||||||||  |||||||||||    
T  25045534 tttatccctactatttctatttca 25045557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 32278420 - 32278543
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaat 106  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||  |||| |||| ||||||||| |||||| |||||||||||||| |  |||||| |    
T  32278420 aactcattccatccaataccactcattcatccaattttccattcctcccaaattggggtgtatccaatggaattgaacacattaataactcaattacatt 32278519  T
Q  107 tttatccctacattttctatttca 130  Q
    ||||||||||   |||||||||||    
T  32278520 tttatccctattatttctatttca 32278543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 42029348 - 42029249
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaa-cacattaataattttattacaatttt 109  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||||| |||||||||| |||||||||||| | ||||| |||||    
T  42029348 cattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaatggaaccacattaataatataattaccatttt 42029249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 40024906 - 40024811
Alignment:
Q  18 tccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaattttatcc 113  Q
    |||||| |||||||||| | ||||||||||||||  ||||||||| ||||||||| ||||||||||||||||||||||  |||||||| |||||||    
T  40024906 tccaatgccactcattccttcaatttttcattcctcccaatttggggtgtatccaatggaatggaacacattaataataatattacaactttatcc 40024811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 39439927 - 39439839
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataat 95  Q
    |||||||||||||||||||||| ||||   |||| ||||||||||  ||||||||| ||||||||| |||||||||| |||| ||||||    
T  39439927 aactcattccatccaataccacccattaaaccaaattttcattccccccaatttggggtgtatccaatggaatggaatacataaataat 39439839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 25909404 - 25909507
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaac-acattaataattttattacaa 105  Q
    |||||||||||||||||||||| || | ||||||||||||||||   ||||||||| |||||| || || |||||||| || |||||||| | |||||||    
T  25909404 aactcattccatccaataccacccactattccaatttttcattctccccaatttggggtgtatgcaatgaaatggaacaaccttaataatgtaattacaa 25909503  T
Q  106 tttt 109  Q
    ||||    
T  25909504 tttt 25909507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 24374271 - 24374193
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacatt 89  Q
    |||||||||||||||||| || |   |||||||||||||||||||||||| | ||||||| || |||||||||||||||    
T  24374271 cattccatccaataccacccacttagccaatttttcattccatccaatttagggtgtatcgagcggaatggaacacatt 24374193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 44713298 - 44713409
Alignment:
Q  18 tccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaattttatccctac 117  Q
    ||||||||||||||||   |||||||||||||||  | ||||||| ||||||| | |||||||||||| || ||| || | ||||||||||| ||||||     
T  44713298 tccaataccactcatttaaccaatttttcattccc-caaatttggggtgtatctaatggaatggaacatatcaattatataattacaattttgtccctat 44713396  T
Q  118 attttctatttca 130  Q
     ||| ||||||||    
T  44713397 ttttcctatttca 44713409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 42957265 - 42957387
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaat 106  Q
    |||||| ||||||||| |||| |||||| |||||||| |||| | | |||| ||||||| ||||   || |||| |||| ||||||||| | |||||| |    
T  42957265 aactcaatccatccaacaccattcattcatccaatttctcatccta-ccaaattggagtttatcagatgaaatgaaacatattaataatctaattacatt 42957363  T
Q  107 tttatccctacattttctatttca 130  Q
    ||||||||| | ||||||||||||    
T  42957364 tttatccctgctttttctatttca 42957387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 14567906 - 14567978
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaat 79  Q
    |||||||||||||||||||||  ||  | | ||||||||||||||  ||||||||| ||||||||| ||||||    
T  14567906 aactcattccatccaataccatccaaaccttcaatttttcattccccccaatttggggtgtatccaatggaat 14567978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 4e-33; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 30084962 - 30085085
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaat 106  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||  |||| |||| ||||||||| ||||||||||||||||||||| |  |||||| |    
T  30084962 aactcattccatccaataccactcattcatccaattttccattcctcccaaattggggtgtatccaatggaatggaacacattaataactcaattacatt 30085061  T
Q  107 tttatccctacattttctatttca 130  Q
    |||||||||||  |||||||||||    
T  30085062 tttatccctactatttctatttca 30085085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 4943593 - 4943692
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaa-cacattaataattttattacaatttt 109  Q
    |||||||||||||||||||||||| | ||||||| ||||||| ||||||||| |||| |||| |||||||||| |||||||||||| | ||||| |||||    
T  4943593 cattccatccaataccactcattccttcaattttccattccacccaatttggggtgtttccaatggaatggaaccacattaataatataattaccatttt 4943692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 5247956 - 5247872
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataat 95  Q
    ||||| ||||||||||||||||||  |||||||| |||||||||||||||   ||||| ||| | ||||||||||||||||||||    
T  5247956 cattcaatccaataccactcattcaaccaattttccattccatccaatttaaggtgtacccaatagaatggaacacattaataat 5247872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 11617296 - 11617384
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataat 95  Q
    |||||||||||||||||||||| ||||   |||| ||||||||||  |||| || | ||||||||| |||||||||| |||| ||||||    
T  11617296 aactcattccatccaataccacccattaagccaaattttcattccccccaaattagtgtgtatccaatggaatggaatacataaataat 11617384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 32233065 - 32233137
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaat 79  Q
    |||||||||||||||||||||| ||  | | |||||||||||||| ||||| |||| ||||||||| ||||||    
T  32233065 aactcattccatccaataccacccaaaccttcaatttttcattccctccaaattggggtgtatccaatggaat 32233137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 29293260 - 29293312
Alignment:
Q  42 ttttcattccatccaatttggagtgtatccagtggaatggaacacattaataat 95  Q
    ||||||||||  ||||||||| | |||||||||||||||||| |||||||||||    
T  29293260 ttttcattccccccaatttgggg-gtatccagtggaatggaatacattaataat 29293312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 9e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 22405098 - 22405187
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaa-cacattaataat 95  Q
    ||||||||||||||||||||| |||||| | ||||||| ||||||| ||||||||||||||||||| |||||||||| ||||||||||||    
T  22405098 aactcattccatccaataccaatcattccttcaattttccattccacccaatttggagtgtatccaatggaatggaaccacattaataat 22405187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 35033884 - 35033761
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaat 106  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||  |||| || |  |||||||| |||||||||||||||||||||    |||||| |    
T  35033884 aactcattccatccaataccactcattcatccaattttccattcctcccaaattaggatgtatccaatggaatggaacacattaataacccaattacatt 35033785  T
Q  107 tttatccctacattttctatttca 130  Q
    |||||||||||  ||| |||||||    
T  35033784 tttatccctactatttgtatttca 35033761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 46944108 - 46944206
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaa 105  Q
    ||||||||||||||||||||||||||| |  ||||||| ||||||| ||||||||| ||||||||| ||||||| | |||||||||||| | |||||||    
T  46944108 aactcattccatccaataccactcattttgtcaattttccattccacccaatttggggtgtatccaatggaatgtagcacattaataatataattacaa 46944206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 21263646 - 21263547
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaa-cacattaataattttattacaatttt 109  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||||||||| ||||||| | ||||||| || |||||||||||| | ||||| |||||    
T  21263646 cattccatccaataccactcattccttcaattttccattccatccaatttggggtgtatcgaatggaatgaaaccacattaataatataattaccatttt 21263547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 31227763 - 31227843
Alignment:
Q  10 tcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaa 91  Q
    ||||||||||||||||||||||||   |||||||||||||||  |||| |||||||||||||| |||||||||| |||||||    
T  31227763 tcattccatccaataccactcatttaaccaatttttcattcc-cccaaattggagtgtatccaatggaatggaatacattaa 31227843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 50859232 - 50859317
Alignment:
Q  10 tcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataat 95  Q
    ||||||||||||||||||| ||||   |||| || |||||||  ||||||||| ||||||||| ||||||||||||||||||||||    
T  50859232 tcattccatccaataccacccatttagccaaattgtcattcctcccaatttggggtgtatccaatggaatggaacacattaataat 50859317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 35292107 - 35292195
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataat 95  Q
    ||||||||| |||||||||||| ||||   |||| |||||||| | |||||||||| ||||||||| |||||||||| |||| ||||||    
T  35292107 aactcattcaatccaataccacccattaagccaaattttcatttcctccaatttggggtgtatccaatggaatggaatacataaataat 35292195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 26861426 - 26861354
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaat 79  Q
    |||||||||||||||||||||| ||  | | |||||||||||||| ||||| |||| ||||||||| ||||||    
T  26861426 aactcattccatccaataccacccaaaccttcaatttttcattccctccaaattggggtgtatccaatggaat 26861354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 41809944 - 41809872
Alignment:
Q  22 ataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataa 94  Q
    ||||||||||||| ||||||||| ||||||  |||||||||  ||||| || ||||||||||| |||||||||    
T  41809944 ataccactcattcatccaattttccattccccccaatttgggatgtattcaatggaatggaacgcattaataa 41809872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 55841422 - 55841522
Alignment:
Q  10 tcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaac-acattaataattttattacaattt 108  Q
    ||||||||||||||| ||  || ||||| ||||||||||||| ||||||||||||||||| ||  |||||| ||| ||| |||||||   ||||||||||    
T  55841422 tcattccatccaatatcatccactcttctaatttttcattccttccaatttggagtgtatgcaaaggaatgaaacaacaataataatgcaattacaattt 55841521  T
Q  109 t 109  Q
    |    
T  55841522 t 55841522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 55777242 - 55777301
Alignment:
Q  10 tcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtat 69  Q
    ||||||||||||||| ||  || ||||| ||||||||||||| |||||||||||||||||    
T  55777242 tcattccatccaatatcatccactcttctaatttttcattccttccaatttggagtgtat 55777301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 48084744 - 48084832
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataat 95  Q
    |||||||| ||||||||||||||||||   |||||||||||||||  |||||||||   |||| |  |||||||||| ||| |||||||    
T  48084744 aactcatttcatccaataccactcatttaaccaatttttcattccccccaatttgggaggtatacgatggaatggaatacaataataat 48084832  T

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Target: scaffold0224 (Bit Score: 55; Significance: 6e-23; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 12486 - 12388
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaatttt 109  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||||||||  ||||||||| | ||||||||||||| |||||| | ||||| |||||    
T  12486 cattccatccaataccactcattccttcaattttccattccatccaatttgaggtgtatccaatagaatggaacacatcaataatataattaccatttt 12388  T

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Target: scaffold0127 (Bit Score: 48; Significance: 8e-19; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 30201 - 30118
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataa 94  Q
    |||||||||  ||||||||||||| ||||||||| ||||||  ||||||||| ||||||||| || ||||||||||||||||||    
T  30201 cattccatcatataccactcattcatccaattttccattccccccaatttggggtgtatccaatgaaatggaacacattaataa 30118  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 28873776 - 28873646
Alignment:
Q  12 attccatccaataccac---tcattcttccaa-tttttcattccatccaatttggagtgtatccagtggaatggaacacattaataattttattacaatt 107  Q
    |||||||||||||||||   || ||| ||||| ||||| ||||| ||||||||   ||||||  | ||||||||||||||||||||||   |||||||||    
T  28873776 attccatccaataccaccactctttcatccaaattttttattccctccaatttaaggtgtatttaatggaatggaacacattaataatccaattacaatt 28873677  T
Q  108 ttatccctacattttctatttcaccttcttct 139  Q
    ||||  |||| |||||||||||||||||||||    
T  28873676 ttatttctac-ttttctatttcaccttcttct 28873646  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 38679803 - 38679888
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaata 93  Q
    |||||||||||| |||||| |||||||   |||| ||||||||||  | ||||||| ||||||||| | |||||||| |||||||||    
T  38679803 aactcattccattcaatactactcattaagccaaattttcattcc-ccaaatttggggtgtatccaattgaatggaatacattaata 38679888  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 11354830 - 11354902
Alignment:
Q  7 aactcattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaat 79  Q
    |||| ||||||||||||||||| ||  | | |||||||| ||||| ||||| |||| ||||||||| ||||||    
T  11354830 aactgattccatccaataccacccaaaccttcaattttttattccctccaaattggggtgtatccaatggaat 11354902  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 10871290 - 10871364
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaaca 85  Q
    |||| |||||||||||||||| |||||||| ||||||||||   ||||||||  ||||| || ||||||||||||    
T  10871290 catttcatccaataccactcactcttccaaattttcattcccctcaatttgggatgtatgcaatggaatggaaca 10871364  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 44182 - 44099
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataa 94  Q
    |||||||||||||||||| ||||   |||||||| ||||||  ||||||||  ||||  ||| ||||||| |||||||||||||    
T  44182 cattccatccaataccacccatttaaccaattttccattccccccaatttgaggtgttcccaatggaatgaaacacattaataa 44099  T

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Target: scaffold0022; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 77903 - 77820
Alignment:
Q  11 cattccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataa 94  Q
    |||||||||||||||||| ||||   |||||||| ||||||  ||||||||  ||||  ||| ||||||| |||||||||||||    
T  77903 cattccatccaataccacccatttaaccaattttccattccccccaatttgaggtgttcccaatggaatgaaacacattaataa 77820  T

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Target: scaffold0039 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 56983 - 57066
Alignment:
Q  12 attccatccaataccactcattcttccaatttttcattccatccaatttggagtgtatccagtggaatggaacacattaataat 95  Q
    ||||||||||||||||||||||    || |||||||||||  |||| ||||   ||||||| |||||||||||||  |||||||    
T  56983 attccatccaataccactcatttagtcattttttcattccccccaaattgggaggtatccaatggaatggaacactctaataat 57066  T

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