View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5811-20 (Length: 141)
Name: Solexa-NF5811-20
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-20 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 3e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 43418265 - 43418126
Alignment:
| Q |
2 |
aagaagaataacacataaatgtcacttgttagtgagaaagcagcctcaactaactcctccatgcatgaatgcatcaattcccacaggcttcgtgtcagag |
101 |
Q |
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| T |
43418265 |
aagaagaataacacataaatgtcacttgttagtgagaaagcagcctcaactaactcctccatgcatgaatgcatcaattcccacaggcttcgtgtcagag |
43418166 |
T |
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| Q |
102 |
catattacttgatgaggaaaagaaaaggaagggacagaga |
141 |
Q |
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| T |
43418165 |
catattacttgatgaggaaaggaaaaggaagggacagaga |
43418126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 43403590 - 43403528
Alignment:
| Q |
70 |
atgcatcaattcccacagg-cttcgtgtcagagcatattacttgatgaggaaaagaaaaggaa |
131 |
Q |
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| T |
43403590 |
atgcatcaattcctacagggcttcgtgtcggagcatattacttgatgaggaaaggaaaaggaa |
43403528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 43406383 - 43406330
Alignment:
| Q |
2 |
aagaagaataacacataaatgtcacttgttagtgagaaagcagcctcaactaac |
55 |
Q |
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| T |
43406383 |
aagaagaataacacataaatgtcacttgtgaatgagaaaacaacctcgactaac |
43406330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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