View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5811-22 (Length: 140)
Name: Solexa-NF5811-22
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-22 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 9e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 4124658 - 4124519
Alignment:
| Q |
1 |
aaaggacaaaacagttgaaaactatgaatagttcgattataatacaaaagatccatcatagccctaactatgaatttagttacaatgtatacaagtacaa |
100 |
Q |
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| T |
4124658 |
aaaggacaaaacagttgaaaactatgaataatttgattataatacaaaagatccatcatagccctaactatgaatttagttacaatgtatataagtacaa |
4124559 |
T |
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| Q |
101 |
acaaaattcacacatcagtccataaatcaacacagtaaat |
140 |
Q |
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| T |
4124558 |
acaaaattcacataacagtccataaatcaacacagtaaat |
4124519 |
T |
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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 4360050 - 4360150
Alignment:
| Q |
30 |
agttcgattataatacaaaagatccatcatagccctaactatgaatttagttacaatgtatacaagtacaaacaaaattcacacatcagtccataaatca |
129 |
Q |
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|||| ||||||| |||| ||||||||||||| ||||||| |||||||| |||||||||||| |||| ||||||||| |||| | ||| ||||||||| |
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| T |
4360050 |
agtttgattatattacataagatccatcataaccctaacaatgaatttgtttacaatgtataatagtataaacaaaatccacatagtagtacataaatca |
4360149 |
T |
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| Q |
130 |
a |
130 |
Q |
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| T |
4360150 |
a |
4360150 |
T |
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