View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5811-23 (Length: 139)
Name: Solexa-NF5811-23
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-23 |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 5e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 4498879 - 4498756
Alignment:
| Q |
8 |
gcgggatggtccaattcccacattttcgtccctcttgacagataaagacaaaggtatcataaacaagatctttcaagcggtcaagaaaatgaaaataagc |
107 |
Q |
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| T |
4498879 |
gcggtatggtccaattcccacattttcatccctcttgacagataaagacaaaggtatcataaacaagatctttcaagcggtcaagaaaatgaaaataagc |
4498780 |
T |
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| Q |
108 |
atgcctgcaagttctgataaagaa |
131 |
Q |
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| T |
4498779 |
atgcctgcaagttctgatcaagaa |
4498756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 4329074 - 4329161
Alignment:
| Q |
52 |
aagacaaaggtatcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgataaagaacatagcaa |
139 |
Q |
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| T |
4329074 |
aagacaaaggtctcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgttaaagaaaatagcaa |
4329161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 4328996 - 4329036
Alignment:
| Q |
8 |
gcgggatggtccaattcccacattttcgtccctcttgacag |
48 |
Q |
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| T |
4328996 |
gcggtatggtccaatttccacattttcatccctcttgacag |
4329036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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