View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5811-25 (Length: 138)
Name: Solexa-NF5811-25
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-25 |
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Alignment Details
Target: chr4 (Bit Score: 55; Significance: 5e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 49954171 - 49954225
Alignment:
| Q |
1 |
agaccctgcaaaaacgcatcgagaaaagtgagtcatacataaattcacacaaaca |
55 |
Q |
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| T |
49954171 |
agaccctgcaaaaacgcatcgagaaaagtgagtcatacataaattcacacaaaca |
49954225 |
T |
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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 49954275 - 49954308
Alignment:
| Q |
105 |
acataaactgttctatacttttctgtttcaacac |
138 |
Q |
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| T |
49954275 |
acataaactgttctatacttttctgtttcaacac |
49954308 |
T |
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