View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5811-26 (Length: 138)
Name: Solexa-NF5811-26
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-26 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 124; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-64
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 43111371 - 43111508
Alignment:
| Q |
1 |
gaaagtccaatagcccatatattcaaacatgtccatgataaggtatttaaaagcccttacaaataygtctatcagaaaatcttcttctgatttccgaacc |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
43111371 |
gaaagtctaatagcccatatatacaaacatgtccatgataaggtatttaaaagcccttacaaatatgtctatcagaaaatcttcttctgatttcagaacc |
43111470 |
T |
|
| Q |
101 |
agtaagttcacacttccctgcaagaatgtccataataa |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43111471 |
agtaagttcacacttccctgcaagaatgtccataataa |
43111508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University