View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5811-3 (Length: 230)
Name: Solexa-NF5811-3
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-3 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 43816259 - 43816481
Alignment:
| Q |
8 |
agcagcaccaagcgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccagtatgataaccagataccgyaatgtagcaataagtgatcaag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43816259 |
agcagcaccaagcgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccagtatgataaccagataccgtaatgtagcaataagtgatcaag |
43816358 |
T |
|
| Q |
108 |
aagacacggaacccatattcataaggcttcaaagttgggtataattttgcataggtagcgcaaaatccaacaatgaatgtactgattataactataactt |
207 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43816359 |
aacacacggaacccatattcataaggcttcaaagttgggtataattttgcataggtagcgcaaaatccaacaatgaatgtactgattataactataactt |
43816458 |
T |
|
| Q |
208 |
cttcccattctcctgcctatgct |
230 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
43816459 |
cttcccattctcctgccaatgct |
43816481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 4e-91
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 43823222 - 43823444
Alignment:
| Q |
8 |
agcagcaccaagcgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccagtatgataaccagataccgyaatgtagcaataagtgatcaag |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |||||| |
|
|
| T |
43823222 |
agcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccactatgataaccagatactgtaatgtagcaataagtaatcaag |
43823321 |
T |
|
| Q |
108 |
aagacacggaacccatattcataaggcttcaaagttgggtataattttgcataggtagcgcaaaatccaacaatgaatgtactgattataactataactt |
207 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
43823322 |
aacacacggaacccatattcataaggcttcaaagttgggtacaattttgcataggtaatacaaaatccaacaatgaatgtactgataatcactataactt |
43823421 |
T |
|
| Q |
208 |
cttcccattctcctgcctatgct |
230 |
Q |
| |
|
||||||||||||| ||| ||||| |
|
|
| T |
43823422 |
cttcccattctccagccaatgct |
43823444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 149; E-Value: 4e-79
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 43830482 - 43830704
Alignment:
| Q |
8 |
agcagcaccaagcgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccagtatgataaccagataccgyaatgtagcaataagtgatcaag |
107 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
43830482 |
agcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaactcaccagtatgataaccagatactgtaatgtagcaataagtgatcaag |
43830581 |
T |
|
| Q |
108 |
aagacacggaacccatattcataaggcttcaaagttgggtataattttgcataggtagcgcaaaatccaacaatgaatgtactgattataactataactt |
207 |
Q |
| |
|
|| |||||||| ||||||||||||||||| |||||||| || | ||||||||| ||||| || |||||||||||||||||| |||| |||||||||| || |
|
|
| T |
43830582 |
aacacacggaaaccatattcataaggctttaaagttggatagagttttgcataagtagcacagaatccaacaatgaatgtagtgataataactataattt |
43830681 |
T |
|
| Q |
208 |
cttcccattctcctgcctatgct |
230 |
Q |
| |
|
||||||||||||| ||| ||||| |
|
|
| T |
43830682 |
cttcccattctccagccaatgct |
43830704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 8e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 87 - 230
Target Start/End: Original strand, 4999146 - 4999289
Alignment:
| Q |
87 |
atgtagcaataagtgatcaagaagacacggaacccatattcataaggcttcaaagttgggtataattttgcataggtagcgcaaaatccaacaatgaatg |
186 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | |||||||||| |||||||||| ||||| | ||||||||| ||||| || |||||||||||||||| |
|
|
| T |
4999146 |
atgtagcaataagtgatcaagaacacacggaaacgatattcataacgcttcaaagtagggtagagttttgcataagtagcacagaatccaacaatgaatg |
4999245 |
T |
|
| Q |
187 |
tactgattataactataacttcttcccattctcctgcctatgct |
230 |
Q |
| |
|
|||| | |||||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
4999246 |
tactactaataactataatttcttcccattctccagccaatgct |
4999289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 31807629 - 31807457
Alignment:
| Q |
8 |
agcagcaccaagcgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccagtatgataaccagataccgyaatgtagcaataagtgatcaag |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || | | ||||| |||||| || || || |||| |||||||| || ||| ||||| ||||||||| |
|
|
| T |
31807629 |
agcagcaccaagagcaatgagcaaaaatctgtttgttgctgtatgaagaaagtctccggttcgatatccagatacaataacgtaacaataggtgatcaag |
31807530 |
T |
|
| Q |
108 |
aagacacggaacccatattcataaggcttcaaagttgggtataattttgcataggtagcgcaaaatccaacaa |
180 |
Q |
| |
|
|| |||||||| ||||||||||||| ||||| ||||| |||| ||||||||| || || |||||||| |||| |
|
|
| T |
31807529 |
aacacacggaatccatattcataagccttcattgttggatatagttttgcatatgtggcacaaaatcctacaa |
31807457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 34803955 - 34804086
Alignment:
| Q |
87 |
atgtagcaataagtgatcaagaagacacggaacccatattcataaggcttcaaagttgggtataattttgcataggtagcgcaaaatccaacaatgaatg |
186 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||| ||||| | ||||||||| ||||| || |||||||||||||||| |
|
|
| T |
34803955 |
atgtagcaataagtgatcaagaacacacggaaaccatattgatatggcttcaaagtagggtagagttttgcataagtagcacagaatccaacaatgaatg |
34804054 |
T |
|
| Q |
187 |
tactgattataactataacttcttcccattct |
218 |
Q |
| |
|
|||| | |||||||||| ||||||||||||| |
|
|
| T |
34804055 |
tactactaataactataatttcttcccattct |
34804086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University