View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5811-30 (Length: 135)
Name: Solexa-NF5811-30
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 122; Significance: 5e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 5e-63
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 54059374 - 54059241
Alignment:
| Q |
1 |
aagatataacctaatcagttcatttcctcacacataacctaataaataagttcataaacacaataatgtaagtaaacgtcaaatgtatgaagttgcatgt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54059374 |
aagatataacctaataagttcatttcctcaaaaataacctaataaataagttcataaacacaataatgtaagtaaacgtcaaatgtatgaagttgcatgt |
54059275 |
T |
|
| Q |
101 |
gctcatatagtccttcataagttccaacagctga |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
54059274 |
gctcatatagtccttcataagttccaacagctga |
54059241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 15037517 - 15037552
Alignment:
| Q |
93 |
ttgcatgtgctcatatagtccttcataagttccaac |
128 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
15037517 |
ttgcatgtgctcatatagtcctttataaattccaac |
15037552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University