View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5811-33 (Length: 131)
Name: Solexa-NF5811-33
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-33 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 8e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 8e-65
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 9496479 - 9496351
Alignment:
| Q |
3 |
ggcttttatgatcaacacatatagacctttccctagacaagttaggaataattattggccttagaattggatatgtatgtgaatcaccagccttcccttc |
102 |
Q |
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| T |
9496479 |
ggcttttatgatcaacacatatagacctttccctagacaagttaggaataattattggccttagaattggatatggatgtgaatcaccagccttcccttc |
9496380 |
T |
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| Q |
103 |
aatttctccaggtaagttattacccaaag |
131 |
Q |
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| T |
9496379 |
aatttctccaggtaagttattacccaaag |
9496351 |
T |
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