View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5811-37 (Length: 129)
Name: Solexa-NF5811-37
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-37 |
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| [»] chr3 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 8e-65; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 8e-65
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 33093595 - 33093467
Alignment:
| Q |
1 |
acatttatagacaccaaatcgcgaagatatggatacaacattgaggagttgtcatcatcattcaaaaactttgccttttgaagatttagatgctgcacaa |
100 |
Q |
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| T |
33093595 |
acatttatagacaccaaatcgcgaagatatggatacaacattgaggagttgtcatcatcattcaaaaactttgcattttgaagatttagatgctgcacaa |
33093496 |
T |
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| Q |
101 |
atctacactttgacaagaaataagagatc |
129 |
Q |
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| T |
33093495 |
atctacactttgacaagaaataagagatc |
33093467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 33708626 - 33708555
Alignment:
| Q |
57 |
atcattcaaaaactttgccttttgaagatttagatgctgcacaaatctacactttgacaagaaataagagat |
128 |
Q |
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| T |
33708626 |
atcattcaaaaactttgcacgttgaatatctagatgctgcagagatcgacactttgacaagaaacaagagat |
33708555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 33714461 - 33714390
Alignment:
| Q |
57 |
atcattcaaaaactttgccttttgaagatttagatgctgcacaaatctacactttgacaagaaataagagat |
128 |
Q |
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| T |
33714461 |
atcattcaaaaactttgcacattgaagatctagatgctgcagagatcgacaatttgacaagaaacaagagat |
33714390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 36810625 - 36810553
Alignment:
| Q |
57 |
atcattcaaaaactttgccttttgaagatttagatgctgcacaaatctacactttgacaagaaataagagatc |
129 |
Q |
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| T |
36810625 |
atcattcaaaaactttgcatcttgaagatctagaagctgtagaaatcgacactttgacagtagataagagatc |
36810553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 18723944 - 18723875
Alignment:
| Q |
60 |
attcaaaaactttgccttttgaagatttagatgctgcacaaatctacactttgacaagaaataagagatc |
129 |
Q |
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| T |
18723944 |
attcaaaaagattgcattttaaagatctagatgttgcagaaatcgacactttgacaagagataagagatc |
18723875 |
T |
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