View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5811-4 (Length: 222)
Name: Solexa-NF5811-4
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-115
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 3009859 - 3010073
Alignment:
| Q |
8 |
taaactaccaaartatgatttgttgcagggtttgaaggatagtggaattggttctcaaggaatcaccaacagtattaacatgatgaccaagattaagacc |
107 |
Q |
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| T |
3009859 |
taaactaccaaaatatgatttgttgcagggtttgaaggatagtggaattggttctcaaggaatcacaaacagtattaacatgatgaccaagattaagacc |
3009958 |
T |
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| Q |
108 |
acagtaatcaacttaccaacaccttcttatacaatgggataagatgcttaataaatagttagtcatagtaacaattttcatattgatgtgatatgcttcc |
207 |
Q |
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| T |
3009959 |
acagtaatcaacttaccaacaccttcttatacaatgggataagatgcttaataaatagttagtcatagtaacaattttcatattgatgtgatatgcttcc |
3010058 |
T |
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| Q |
208 |
actttcctatgcttc |
222 |
Q |
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| T |
3010059 |
actttcctatgcttc |
3010073 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 54724744 - 54724647
Alignment:
| Q |
48 |
agtggaattggttctcaaggaatcaccaacagtattaacatgatgaccaagattaagaccacagtaatcaacttaccaacaccttcttatacaatggg |
145 |
Q |
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| T |
54724744 |
agtggaattggatcacaaggaattaccaacagcataaacatgatgacaaaaatcaaaactaccgtgataaacttgccaagcccttcttataccatggg |
54724647 |
T |
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