View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5811-44 (Length: 127)
Name: Solexa-NF5811-44
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-44 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 109; Significance: 3e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 33028649 - 33028771
Alignment:
| Q |
8 |
gcaaagaggggagatgtgatgttagttctgtttaat---aagtcatgtataccttttgtatcatgtatacttattaaactaaataataagtcatttaacg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33028649 |
gcaaagaggggagatgtgatgttagttctgtttaataataagtcatgtataccttttgtatcatgtatacttattaaactaaataataagtcatttaacg |
33028748 |
T |
|
| Q |
105 |
gtttccattttatgtttcaactt |
127 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33028749 |
gtttccattttatgtttcaactt |
33028771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 33040111 - 33040146
Alignment:
| Q |
8 |
gcaaagaggggagatgtgatgttagttctgtttaat |
43 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33040111 |
gcaaagaggggagatgtgatgttagtcctgtttaat |
33040146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University