View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5811-48 (Length: 127)

Name: Solexa-NF5811-48
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5811-48
Solexa-NF5811-48
[»] chr6 (2 HSPs)
chr6 (7-127)||(1197161-1197281)
chr6 (41-127)||(1186680-1186764)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 3e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 1197281 - 1197161
Alignment:
Q  7 aaaaacattcatattaataaaagtataaacattctaagcataaatgcaacatgttcgacaaaaaaggaaaacatggcaagacaagtttcctttccctctt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  1197281 aaaaacattcatattaataaaagtataaacattctaagcataaatgtaacatgtttgacaaaaaaggaaaacatggcaagacaagtttcctttccccctt 1197182  T
Q  107 ctgtcatataggacaatcaca 127  Q
    |||||||||||||||||||||    
T  1197181 ctgtcatataggacaatcaca 1197161  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 1186764 - 1186680
Alignment:
Q  41 taagcataaatgcaacatgttcgacaaaaaaggaaaacatggcaagacaagtttcctttccctcttctgtcatataggacaatcaca 127  Q
    |||||||||||||||| | || |||| ||||||| |||||||||||||||||||  ||| |  ||||||||||||||||||||||||    
T  1186764 taagcataaatgcaacgtttttgacataaaaggagaacatggcaagacaagttttgttttc--cttctgtcatataggacaatcaca 1186680  T

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