View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5811-55 (Length: 124)

Name: Solexa-NF5811-55
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5811-55
Solexa-NF5811-55
[»] chr8 (6 HSPs)
chr8 (14-59)||(43539752-43539797)
chr8 (79-124)||(43539688-43539733)
chr8 (15-59)||(59679-59723)
chr8 (26-59)||(35676373-35676406)
chr8 (17-57)||(60168-60208)
chr8 (28-59)||(43539245-43539276)
[»] chr7 (1 HSPs)
chr7 (28-59)||(8484158-8484189)


Alignment Details
Target: chr8 (Bit Score: 46; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 43539797 - 43539752
Alignment:
Q  14 ctatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43539797 ctatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 43539752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 43539733 - 43539688
Alignment:
Q  79 attaatgataaaaaaccaaataaagaatatttatcaccttcatctc 124  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  43539733 attaatgataaaaaaccaaaaaaagaatatttatcaccttcatctc 43539688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 59679 - 59723
Alignment:
Q  15 tatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 59  Q
    |||||||||  ||||||||||||||||||||||||||||||||||    
T  59679 tatgttaaccgatgatgtgtcaatcatagggaccaaattgaaagt 59723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 35676406 - 35676373
Alignment:
Q  26 atgatgtgtcaatcatagggaccaaattgaaagt 59  Q
    |||||||||||||||||||||| |||||||||||    
T  35676406 atgatgtgtcaatcatagggactaaattgaaagt 35676373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 60208 - 60168
Alignment:
Q  17 tgttaactcatgatgtgtcaatcatagggaccaaattgaaa 57  Q
    ||||||||  |||||||||| ||||||||||||||||||||    
T  60208 tgttaactgctgatgtgtcattcatagggaccaaattgaaa 60168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 59
Target Start/End: Original strand, 43539245 - 43539276
Alignment:
Q  28 gatgtgtcaatcatagggaccaaattgaaagt 59  Q
    ||||||||||| ||||||||||||||||||||    
T  43539245 gatgtgtcaattatagggaccaaattgaaagt 43539276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 8484189 - 8484158
Alignment:
Q  28 gatgtgtcaatcatagggaccaaattgaaagt 59  Q
    |||||||||||||||||||| |||||||||||    
T  8484189 gatgtgtcaatcatagggactaaattgaaagt 8484158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University