View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5811-6 (Length: 209)

Name: Solexa-NF5811-6
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5811-6
Solexa-NF5811-6
[»] chr6 (12 HSPs)
chr6 (9-203)||(33285436-33285630)
chr6 (59-154)||(33262515-33262610)
chr6 (74-154)||(33398958-33399038)
chr6 (67-154)||(33644564-33644651)
chr6 (9-154)||(33304326-33304468)
chr6 (63-149)||(28870198-28870284)
chr6 (67-154)||(9166649-9166736)
chr6 (74-154)||(33271690-33271776)
chr6 (59-154)||(33409861-33409956)
chr6 (74-154)||(33057470-33057550)
chr6 (77-146)||(33388061-33388130)
chr6 (74-120)||(33358800-33358846)
[»] scaffold1408 (1 HSPs)
scaffold1408 (59-154)||(533-628)
[»] scaffold0428 (1 HSPs)
scaffold0428 (59-154)||(6279-6374)
[»] chr4 (5 HSPs)
chr4 (67-154)||(31479032-31479119)
chr4 (67-154)||(31157123-31157210)
chr4 (74-150)||(31148192-31148268)
chr4 (67-154)||(31472571-31472661)
chr4 (74-147)||(31504224-31504297)
[»] chr2 (1 HSPs)
chr2 (74-154)||(17440904-17440984)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 33285436 - 33285630
Alignment:
Q  9 ttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatccatgaaaatgccatgctact 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33285436 ttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatccatgaaaatgccatgctact 33285535  T
Q  109 gcaacgttccctttcacctaattttggacagttgaaaatgaccaattgtgtaacttttctaggaaaaaggtcatgaaacttgttgttcttctcac 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  33285536 gcaacgttccctttcacctaattttggacagttgaaaatgaccaattgtgtaacttttctagtaaaaaggtcatgaaacttgttgttgttctcac 33285630  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 33262515 - 33262610
Alignment:
Q  59 tgttggtatgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 154  Q
    ||||||||||| || ||||||||| || |||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  33262515 tgttggtatgcttgaatgaattgtgtcgtccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaccaat 33262610  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 33398958 - 33399038
Alignment:
Q  74 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 154  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||    
T  33398958 atgaattgtatcatccatgaaaatgtcatgctactgcaacgttccctctcacccaattttgaacagttgaaaatgaccaat 33399038  T

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Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 33644651 - 33644564
Alignment:
Q  67 tgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 154  Q
    |||||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||    
T  33644651 tgcctgaatgaattgtatcatccatgaaaatgtcatgctcctgcaacgttccctctcacccaattttgaacagttgaaaatgaccaat 33644564  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 33304326 - 33304468
Alignment:
Q  9 ttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatccatgaaaatgccatgctact 108  Q
    |||||||||||||||| |||||||  |||||   ||||| ||||||  | |||  || |||||  ||||||||| ||| ||||||||||| |||||||||    
T  33304326 ttcctggagtaacaatttgaatccaatcaaa---ggacgtagggtaggattgtgagtttgcctcaatgaattgtgtcaaccatgaaaatgtcatgctact 33304422  T
Q  109 gcaacgttccctttcacctaattttggacagttgaaaatgaccaat 154  Q
    |||||||||||| ||||| |||||||||||||||||||||| ||||    
T  33304423 gcaacgttccctctcacccaattttggacagttgaaaatgaacaat 33304468  T

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Target: chr6; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 28870284 - 28870198
Alignment:
Q  63 ggtatgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatga 149  Q
    |||||||| | ||||||||| ||||||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||||||||    
T  28870284 ggtatgcccgaatgaattgtttcatccatgaaaatgccatgctacaacaacgttccctctcacctaaatttggacagttgaaaatga 28870198  T

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Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 9166649 - 9166736
Alignment:
Q  67 tgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 154  Q
    |||||| || ||||| |||||||||||||||| ||||||||||||| ||||| | ||||  |||| ||||||||||||||||||||||    
T  9166649 tgcctgaataaattgcatcatccatgaaaatgtcatgctactgcaatgttccttatcactcaattctggacagttgaaaatgaccaat 9166736  T

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Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 33271690 - 33271776
Alignment:
Q  74 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcac------ctaattttggacagttgaaaatgaccaat 154  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| ||||      | |||||||||||||||||||||||||||    
T  33271690 atgaattgtatcatccatgaaaatgtcaagctactgcaacgttccctctcacagtcagccaattttggacagttgaaaatgaccaat 33271776  T

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Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 33409861 - 33409956
Alignment:
Q  59 tgttggtatgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 154  Q
    ||||||| |||||| ||||| |||  ||||||||||| ||  |||||||||||||||||||| ||| | |||||||||||||||||||||| ||||    
T  33409861 tgttggtttgcctgaatgaaatgtgccatccatgaaattgtgatgctactgcaacgttccctctcaaccaattttggacagttgaaaatgaacaat 33409956  T

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Target: chr6; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 33057470 - 33057550
Alignment:
Q  74 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 154  Q
    ||||||||| |||||||| ||| || |||||| |||||| ||||||| ||||| |||||||||||||||||||||| ||||    
T  33057470 atgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaat 33057550  T

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Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 33388061 - 33388130
Alignment:
Q  77 aattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaa 146  Q
    |||||| ||||||||||||||| ||||||||||||||  ||||| ||||| | |||||||||||||||||    
T  33388061 aattgtgtcatccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaa 33388130  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 33358800 - 33358846
Alignment:
Q  74 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccct 120  Q
    ||||||||| |||||||||||| || |||||||||||||||||||||    
T  33358800 atgaattgtttcatccatgaaagtgtcatgctactgcaacgttccct 33358846  T

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Target: scaffold1408 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 533 - 628
Alignment:
Q  59 tgttggtatgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 154  Q
    ||||||| |||||| ||||||||| |||||||||||||||  |||||||| |||| |||||| ||||| |||||||||||||||||||||||||||    
T  533 tgttggtttgcctgaatgaattgtttcatccatgaaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaat 628  T

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Target: scaffold0428 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 6279 - 6374
Alignment:
Q  59 tgttggtatgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 154  Q
    ||||||| |||||| ||||||||| |||||||||||||||  |||||||| |||| |||||| ||||| |||||||||||||||||||||||||||    
T  6279 tgttggtttgcctgaatgaattgtttcatccatgaaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaat 6374  T

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Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 31479119 - 31479032
Alignment:
Q  67 tgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 154  Q
    |||||| ||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| ||||| |||||||||||||||| ||||    
T  31479119 tgcctgaatgaattgtatcatccatgaaaatgtcatgctactccaacgttccgtttcacccaatttaggacagttgaaaatgaacaat 31479032  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 31157123 - 31157210
Alignment:
Q  67 tgcctggatgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 154  Q
    |||||| || |||||||||||||||||||||||||||||| |||||  ||| || ||||| ||||| |||||||||||||||||||||    
T  31157123 tgcctgaatcaattgtatcatccatgaaaatgccatgctattgcaatcttcactctcacccaatttaggacagttgaaaatgaccaat 31157210  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 31148192 - 31148268
Alignment:
Q  74 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgac 150  Q
    |||| |||||||||||||||||||  ||||||| | |||| |||||| ||||| ||||| |||||||||||||||||    
T  31148192 atgagttgtatcatccatgaaaatatcatgctattccaacattccctctcacccaatttaggacagttgaaaatgac 31148268  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 31472661 - 31472571
Alignment:
Q  67 tgcctggatgaattgtatcatccatgaaaatgccatgctactgcaac---gttccctttcacctaattttggacagttgaaaatgaccaat 154  Q
    |||||| |||| |||||||||||||||||||| |||| || ||||||   ||||||| ||||| || || |||||||||||||||| ||||    
T  31472661 tgcctgaatgagttgtatcatccatgaaaatgtcatgttagtgcaacaatgttccctctcacccaaattaggacagttgaaaatgagcaat 31472571  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 31504297 - 31504224
Alignment:
Q  74 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaat 147  Q
    ||||||||||||||||||||||||| ||| ||| || | | |||||| ||| | ||||| ||||||||||||||    
T  31504297 atgaattgtatcatccatgaaaatgtcattctaatgtagcattccctctcatccaatttaggacagttgaaaat 31504224  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 17440984 - 17440904
Alignment:
Q  74 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 154  Q
    |||||||| |||||||||||||||| |||||||||| ||| |||||| ||||| ||||||||||||||||| |||| ||||    
T  17440984 atgaattgcatcatccatgaaaatgtcatgctactgtaacattccctctcacccaattttggacagttgaagatgaacaat 17440904  T

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