View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5811-68 (Length: 116)
Name: Solexa-NF5811-68
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-68 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 7e-56; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 7e-56
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 13115365 - 13115474
Alignment:
| Q |
7 |
atgttcaatatttctcacatctattgtgtacaactcactttgatttggtgcaagaagcctcatagttggatgagtttttgctaattgagcatggtaatca |
106 |
Q |
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| T |
13115365 |
atgttcaatatttctcacatctattgtgtacaactcactttgatttggtgcaagaagcctcatagttggatgagtttttgctaattgagcatggtaatca |
13115464 |
T |
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| Q |
107 |
tggagtttct |
116 |
Q |
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| T |
13115465 |
tggagtttct |
13115474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 18670073 - 18669964
Alignment:
| Q |
7 |
atgttcaatatttctcacatctattgtgtacaactcactttgatttggtgcaagaagcctcatagttggatgagtttttgctaattgagcatggtaatca |
106 |
Q |
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| T |
18670073 |
atgttcaatatttctcacatctattctgtacaactcactttgatttggtgcaagaagcctcatagttggatgagtttttgctaattgagcatggtaatca |
18669974 |
T |
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| Q |
107 |
tggagtttct |
116 |
Q |
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| T |
18669973 |
tggagtttct |
18669964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 13105889 - 13106000
Alignment:
| Q |
5 |
acatgttcaatatttctcacatctattgtgtacaactcactttgatttggtgcaagaagcctcatagttggatgagtttttgctaattgagcatggtaat |
104 |
Q |
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| T |
13105889 |
acatgttcaatatttctcacatctattgtgtacaactcactatgatttggtgcaagaagtctataagttggatgaattttggccaattgagcatggtaat |
13105988 |
T |
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| Q |
105 |
catggagtttct |
116 |
Q |
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| T |
13105989 |
catagagtttct |
13106000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 13100094 - 13100206
Alignment:
| Q |
5 |
acatgttcaatatttctcacatctattgtgtacaac---tcactttgatttggtgcaagaagcctcatagttggatgagtttttgctaattgagcatggt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| |||| || | |||||| |||| |
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| T |
13100094 |
acatgttcaatatttctcacatctattgtgtacaactgatcactttgatttggtgcaagaagtctataagttggatgaattttggccatttgagcttggt |
13100193 |
T |
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| Q |
102 |
aatcatggagttt |
114 |
Q |
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| T |
13100194 |
aatcatagagttt |
13100206 |
T |
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