View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5811-72 (Length: 110)

Name: Solexa-NF5811-72
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5811-72
Solexa-NF5811-72
[»] chr8 (5 HSPs)
chr8 (8-102)||(45457198-45457292)
chr8 (8-54)||(14880396-14880442)
chr8 (16-54)||(23702350-23702388)
chr8 (8-95)||(25143966-25144049)
chr8 (17-60)||(41567151-41567194)
[»] chr7 (1 HSPs)
chr7 (8-54)||(17876230-17876276)
[»] chr1 (3 HSPs)
chr1 (8-54)||(12961052-12961098)
chr1 (15-64)||(6320613-6320663)
chr1 (8-53)||(8301552-8301597)
[»] chr4 (2 HSPs)
chr4 (15-54)||(2180836-2180875)
chr4 (8-60)||(21597609-21597661)
[»] chr6 (2 HSPs)
chr6 (8-52)||(1377270-1377314)
chr6 (8-52)||(1385018-1385062)
[»] chr3 (1 HSPs)
chr3 (8-88)||(44436605-44436681)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 2e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 45457198 - 45457292
Alignment:
Q  8 aaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttagtgggttaaaattgctattaagccattaaataatttac 102  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  45457198 aaaactgccacagatgcaaaatttaggggacgattttgtaattttttcttcttcttagggggttaaaactgctattaagccattaaataatttac 45457292  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 14880442 - 14880396
Alignment:
Q  8 aaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 54  Q
    ||||| ||||||||||||||||||||||||||||||| || ||||||    
T  14880442 aaaactgccacagatgcaaaatttaggggacaattttatagtttttt 14880396  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 23702350 - 23702388
Alignment:
Q  16 cacagatgcaaaatttaggggacaattttgtaatttttt 54  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  23702350 cacaaatgcaaaacttaggggacaattttgtaatttttt 23702388  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 25144049 - 25143966
Alignment:
Q  8 aaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttagtgggttaaaattgctattaagccattaaat 95  Q
    ||||| ||||||||||||||| |||| || |||||||||| ||||||    ||||||| ||| ||||| | |||||||||||| ||||    
T  25144049 aaaactgccacagatgcaaaacttagtggccaattttgtagtttttt----ttcttagggggctaaaactactattaagccataaaat 25143966  T

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Target: chr8; HSP #5
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 41567151 - 41567194
Alignment:
Q  17 acagatgcaaaatttaggggacaattttgtaattttttcttctt 60  Q
    ||||||||||||||||||||||  ||||||| |||||| |||||    
T  41567151 acagatgcaaaatttaggggactgttttgtagtttttttttctt 41567194  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 17876276 - 17876230
Alignment:
Q  8 aaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 54  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||    
T  17876276 aaaaccgccacagatgcaaaatttagggggcagttttgtaatttttt 17876230  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 12961052 - 12961098
Alignment:
Q  8 aaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 54  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  12961052 aaaactgccacagttgcaaaatttaggggacaattttgtagtttttt 12961098  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 6320663 - 6320613
Alignment:
Q  15 ccacagatgcaaaatttaggggacaattttgta-attttttcttcttctta 64  Q
    ||||||||||||||||||||||||  |||||||  ||||||||||||||||    
T  6320663 ccacagatgcaaaatttaggggacggttttgtattttttttcttcttctta 6320613  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 8301552 - 8301597
Alignment:
Q  8 aaaacggccacagatgcaaaatttaggggacaattttgtaattttt 53  Q
    ||||| |||||||||||||||||||||||||  ||||||| |||||    
T  8301552 aaaactgccacagatgcaaaatttaggggacggttttgtagttttt 8301597  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 2180875 - 2180836
Alignment:
Q  15 ccacagatgcaaaatttaggggacaattttgtaatttttt 54  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  2180875 ccacagatgcaaaatttaggggacgattttgtagtttttt 2180836  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 21597609 - 21597661
Alignment:
Q  8 aaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttctt 60  Q
    ||||| |||||| ||||||||||||||||||  ||||||| |||||| |||||    
T  21597609 aaaactgccacatatgcaaaatttaggggacggttttgtagtttttttttctt 21597661  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 1377314 - 1377270
Alignment:
Q  8 aaaacggccacagatgcaaaatttaggggacaattttgtaatttt 52  Q
    ||||| |||||| |||||||||||||||| | |||||||||||||    
T  1377314 aaaacagccacaaatgcaaaatttagggggcgattttgtaatttt 1377270  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 1385062 - 1385018
Alignment:
Q  8 aaaacggccacagatgcaaaatttaggggacaattttgtaatttt 52  Q
    ||||| |||||| |||||||||||||||| | |||||||||||||    
T  1385062 aaaacagccacaaatgcaaaatttagggggcgattttgtaatttt 1385018  T

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Target: chr3 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 44436605 - 44436681
Alignment:
Q  8 aaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttagtgggttaaaattgctattaagcc 88  Q
    ||||| ||||||||||||||| ||||||| |  ||||||| ||||||    ||||||| ||| ||||| ||||||||||||    
T  44436605 aaaactgccacagatgcaaaacttagggggcggttttgtagtttttt----ttcttagggggctaaaactgctattaagcc 44436681  T

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