View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5811-78 (Length: 100)
Name: Solexa-NF5811-78
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-78 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 8e-46; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 8e-46
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 928496 - 928404
Alignment:
| Q |
8 |
cttgggaaccttacaccagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatg |
100 |
Q |
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| T |
928496 |
cttgggaaccttacaccagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatg |
928404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 939421 - 939331
Alignment:
| Q |
8 |
cttgggaaccttacaccagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaa |
98 |
Q |
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| T |
939421 |
cttgggaaccatacaccagcaaagaacaaggcatcagcttcattgaaaatataccaaacaagtttctatggtgcaaagcaatatgccttaa |
939331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 924141 - 924049
Alignment:
| Q |
8 |
cttgggaaccttacaccagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcattaatg |
100 |
Q |
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| T |
924141 |
cttgggaactctacaccagcaaggatgatggcatcaacttcattgaaaatattgctaccaagtttctatggtgcaaagcaatatgcatcaatg |
924049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 926176 - 926122
Alignment:
| Q |
11 |
gggaaccttacaccagcagagaagatggcatcaacttcatagaaagtatagaaag |
65 |
Q |
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| T |
926176 |
gggaaccttacaccagcaaagaccaaggcatcaacttcattgaaaatatagaaag |
926122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 935629 - 935547
Alignment:
| Q |
11 |
gggaaccttacaccagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgc |
93 |
Q |
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| T |
935629 |
gggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatatggcaggcaagtatctacgttgcaaagcaatatgc |
935547 |
T |
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