View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5811-8 (Length: 201)
Name: Solexa-NF5811-8
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-8 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 31607906 - 31608011
Alignment:
| Q |
8 |
ttgtgctctctgttcacttattttttctaatataattatgcttattcattagattcaaagcattgctttacaattttgttttcttaccaatgcattgatt |
107 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31607906 |
ttgtgctctctgttcacttaatttttctaatataattatgcttattcactagattcaaagcattgctttacaattttgttttcttactaatgcattgatt |
31608005 |
T |
|
| Q |
108 |
tggtga |
113 |
Q |
| |
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|||||| |
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| T |
31608006 |
tggtga |
31608011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 45288880 - 45288776
Alignment:
| Q |
8 |
ttgtgctctctgttcacttattttttctaatataattatgcttattcattagattcaaagcattgctttacaattttgttttcttaccaatgcattgatt |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45288880 |
ttgtgctctctgttcacttattttttctaatataattatgcttattcatta-aatcaaagcattgctttacaattttgttttcttactaatgcattgatt |
45288782 |
T |
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| Q |
108 |
tggtga |
113 |
Q |
| |
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|||||| |
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| T |
45288781 |
tggtga |
45288776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 12631070 - 12630965
Alignment:
| Q |
8 |
ttgtgctctctgttcacttattttttctaatataattatgcttattcattagattcaaagcattgctttacaattttgttttcttaccaatgcattgatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| || |||||||||||| |
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| T |
12631070 |
ttgtgctctctgttcacttattttttctactataattatgcttattcactagattcaaaacattgctttacaattttgttttctcactaatgcattgatt |
12630971 |
T |
|
| Q |
108 |
tggtga |
113 |
Q |
| |
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|||||| |
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|
| T |
12630970 |
tggtga |
12630965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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