View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5811-81 (Length: 68)
Name: Solexa-NF5811-81
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-81 |
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| [»] chr6 (8 HSPs) |
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| [»] scaffold1408 (1 HSPs) |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 56; Significance: 6e-24; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-24
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 33285532 - 33285587
Alignment:
| Q |
13 |
tactgcaacgttccctttcacctaattttggacagttgaaaatgaccaattgtgta |
68 |
Q |
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| T |
33285532 |
tactgcaacgttccctttcacctaattttggacagttgaaaatgaccaattgtgta |
33285587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 33262561 - 33262610
Alignment:
| Q |
13 |
tactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat |
62 |
Q |
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| T |
33262561 |
tactgcaacgttccctctcacccaattttggacagttgaaaatgaccaat |
33262610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 33304419 - 33304468
Alignment:
| Q |
13 |
tactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat |
62 |
Q |
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| T |
33304419 |
tactgcaacgttccctctcacccaattttggacagttgaaaatgaacaat |
33304468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 33398989 - 33399038
Alignment:
| Q |
13 |
tactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat |
62 |
Q |
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| T |
33398989 |
tactgcaacgttccctctcacccaattttgaacagttgaaaatgaccaat |
33399038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 33644611 - 33644564
Alignment:
| Q |
15 |
ctgcaacgttccctttcacctaattttggacagttgaaaatgaccaat |
62 |
Q |
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| T |
33644611 |
ctgcaacgttccctctcacccaattttgaacagttgaaaatgaccaat |
33644564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 33409907 - 33409956
Alignment:
| Q |
13 |
tactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat |
62 |
Q |
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|||||||||||||||| ||| | |||||||||||||||||||||| |||| |
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| T |
33409907 |
tactgcaacgttccctctcaaccaattttggacagttgaaaatgaacaat |
33409956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 28870237 - 28870198
Alignment:
| Q |
18 |
caacgttccctttcacctaattttggacagttgaaaatga |
57 |
Q |
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| T |
28870237 |
caacgttccctctcacctaaatttggacagttgaaaatga |
28870198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 33057503 - 33057550
Alignment:
| Q |
15 |
ctgcaacgttccctttcacctaattttggacagttgaaaatgaccaat |
62 |
Q |
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| T |
33057503 |
ctgcaatgttccctctcacccaattttggacagttgaaaatgagcaat |
33057550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 35; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 574 - 628
Alignment:
| Q |
8 |
tatgatactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat |
62 |
Q |
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|||| |||| |||| |||||| ||||| ||||||||||||||||||||||||||| |
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| T |
574 |
tatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaat |
628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 35; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 6320 - 6374
Alignment:
| Q |
8 |
tatgatactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat |
62 |
Q |
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|||| |||| |||| |||||| ||||| ||||||||||||||||||||||||||| |
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| T |
6320 |
tatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaat |
6374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 31479081 - 31479032
Alignment:
| Q |
13 |
tactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat |
62 |
Q |
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|||| ||||||||| ||||||| ||||| |||||||||||||||| |||| |
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| T |
31479081 |
tactccaacgttccgtttcacccaatttaggacagttgaaaatgaacaat |
31479032 |
T |
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