View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5811-92 (Length: 43)
Name: Solexa-NF5811-92
Description: NF5811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5811-92 |
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Alignment Details
Target: chr7 (Bit Score: 34; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 27296415 - 27296448
Alignment:
| Q |
2 |
atgaacggcatacctggactcgatcttaccgcct |
35 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
27296415 |
atgaacggcatacctggactcgatcttaccgcct |
27296448 |
T |
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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 27281947 - 27281980
Alignment:
| Q |
2 |
atgaacggcatacctggactcgatcttaccgcct |
35 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
27281947 |
atgatcggcatacctggactcgatcttaccgcct |
27281980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 27271836 - 27271874
Alignment:
| Q |
2 |
atgaacggcatacctggactcgatcttaccgcctctgct |
40 |
Q |
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||||| ||||||||||| |||||||||||||||| |||| |
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| T |
27271836 |
atgaatggcatacctgggctcgatcttaccgcctttgct |
27271874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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