View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5812-11 (Length: 127)
Name: Solexa-NF5812-11
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5812-11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 3e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 4247591 - 4247476
Alignment:
| Q |
8 |
aaactgacgcctccgaatggatataaggactgaaaaggaaaaataggtatgaatgaaaacatccaaggaatatggcatcaaatcattgaaagagcgagcg |
107 |
Q |
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| T |
4247591 |
aaactgacgcctccggatggatataaggactgaaaaggaaaaataggtatgaatgaaaacatccaaggaatatggcatcaaatcattgaaaga----gcg |
4247496 |
T |
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| Q |
108 |
aaacacagatgctcgaccaa |
127 |
Q |
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| T |
4247495 |
aaacacagatgctcgaccaa |
4247476 |
T |
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Target: chr1 (Bit Score: 43; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 2402503 - 2402573
Alignment:
| Q |
30 |
ataaggactgaaaaggaaaa-ataggtatgaatgaaaacatccaaggaatatggcatcaaatcattgaaag |
99 |
Q |
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|||||||||||||| ||||| ||||||||| ||||||||||||||||||| |||| |||| |||||||||| |
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| T |
2402503 |
ataaggactgaaaatgaaaaaataggtatgtatgaaaacatccaaggaatgtggcgtcaactcattgaaag |
2402573 |
T |
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