View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5812-13 (Length: 125)
Name: Solexa-NF5812-13
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5812-13 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 1e-54; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 13872170 - 13872059
Alignment:
| Q |
14 |
ttgtcggagtgtcaaatcatagtattgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaat |
113 |
Q |
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| T |
13872170 |
ttgtcggattgtcaaatcatagtattgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaat |
13872071 |
T |
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| Q |
114 |
tgtctttctccg |
125 |
Q |
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| T |
13872070 |
tgtctttctccg |
13872059 |
T |
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Target: chr5; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 13882607 - 13882532
Alignment:
| Q |
49 |
atttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctcc |
124 |
Q |
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| T |
13882607 |
atttcatttttaactgttttatgggactatactgtgatcctctcacttgttaagttctttgtaattgtctttctcc |
13882532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 13874491 - 13874401
Alignment:
| Q |
23 |
tgtcaaatcatagtattgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaat |
113 |
Q |
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| T |
13874491 |
tgtcaaatcatagcattgataacatcatttaattttcaatggttttacgggactatcaagtgatcccctcacttgttaagttctttgtaat |
13874401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 13884392 - 13884339
Alignment:
| Q |
72 |
gaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccg |
125 |
Q |
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| T |
13884392 |
gaactatcaagtgatcacctcacttgtgaagttctttgtaattgtctttctccg |
13884339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 16025153 - 16025066
Alignment:
| Q |
38 |
ttgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccg |
125 |
Q |
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| T |
16025153 |
ttgatagcaccatttcatttttaactgttttatgggactatcaaatgatcgatttacttgtgaagttctttataattgtctttctccg |
16025066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 14397150 - 14397203
Alignment:
| Q |
60 |
aactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaat |
113 |
Q |
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| T |
14397150 |
aactgttttatgggactatcaagtgttcccctcacttttaaagttctttgtaat |
14397203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 13884453 - 13884401
Alignment:
| Q |
23 |
tgtcaaatcatagtattgatagcataatttcatttttaactgttttatggaacta |
77 |
Q |
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| T |
13884453 |
tgtcaaatcttagttttgatagcataatttccttt--aactgttttatggaacta |
13884401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 14392607 - 14392653
Alignment:
| Q |
64 |
gttttatggaactatcaagtgatcacctcacttgttaagttctttgt |
110 |
Q |
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| T |
14392607 |
gttttatgggactatcaagtgatcccctcacttgtaaagttcattgt |
14392653 |
T |
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