View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5812-17 (Length: 116)
Name: Solexa-NF5812-17
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5812-17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 5e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 5e-41
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 20179101 - 20179210
Alignment:
| Q |
7 |
actgagattgtcgtctactactactaatgctaagaaacgaagttacaacgtgaaacggtaaaacgtttgnnnnnnnacttttggtgaatgaataaagttt |
106 |
Q |
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| T |
20179101 |
actgagattgtcgtctactactactaatgctaagaaacgaagttacaacgtgaaacggtaaaaagtttgtttttttacttttggtgaatgaataaagttt |
20179200 |
T |
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| Q |
107 |
gctaatttta |
116 |
Q |
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|||||||||| |
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| T |
20179201 |
gctaatttta |
20179210 |
T |
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