View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5812-22 (Length: 56)

Name: Solexa-NF5812-22
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5812-22
Solexa-NF5812-22
[»] chr5 (12 HSPs)
chr5 (1-55)||(37533971-37534025)
chr5 (3-55)||(37400047-37400099)
chr5 (3-55)||(37712497-37712549)
chr5 (3-55)||(37824768-37824820)
chr5 (3-55)||(37697660-37697712)
chr5 (2-40)||(37412526-37412564)
chr5 (13-55)||(37436590-37436632)
chr5 (13-55)||(37640755-37640797)
chr5 (5-42)||(37429616-37429653)
chr5 (12-39)||(37392209-37392236)
chr5 (4-42)||(37381583-37381621)
chr5 (13-55)||(37595207-37595249)
[»] chr4 (2 HSPs)
chr4 (1-42)||(24216988-24217029)
chr4 (4-55)||(16842111-16842162)
[»] chr3 (1 HSPs)
chr3 (13-55)||(14553921-14553963)


Alignment Details
Target: chr5 (Bit Score: 43; Significance: 2e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37533971 - 37534025
Alignment:
Q  1 gaaagagaggaccaagtaccttagaggagtgctccagttggagtgtgggagttga 55  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||    
T  37533971 gaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttga 37534025  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 37400099 - 37400047
Alignment:
Q  3 aagagaggaccaagtaccttagaggagtgctccagttggagtgtgggagttga 55  Q
    |||||||||||||||||||||||||||||||||||||||| | ||| ||||||    
T  37400099 aagagaggaccaagtaccttagaggagtgctccagttggactttggaagttga 37400047  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 37712497 - 37712549
Alignment:
Q  3 aagagaggaccaagtaccttagaggagtgctccagttggagtgtgggagttga 55  Q
    |||||||||||||||||||||||||||||||||||||||| | ||| ||||||    
T  37712497 aagagaggaccaagtaccttagaggagtgctccagttggactttggaagttga 37712549  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.0000000000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 37824768 - 37824820
Alignment:
Q  3 aagagaggaccaagtaccttagaggagtgctccagttggagtgtgggagttga 55  Q
    |||||||| ||||||||||||||||||||||||||||||| | ||| ||||||    
T  37824768 aagagaggtccaagtaccttagaggagtgctccagttggactttggaagttga 37824820  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 37697660 - 37697712
Alignment:
Q  3 aagagaggaccaagtaccttagaggagtgctccagttggagtgtgggagttga 55  Q
    |||||||| | ||||||||||||||||||||||||||||| | ||| ||||||    
T  37697660 aagagaggtctaagtaccttagaggagtgctccagttggactttggaagttga 37697712  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 37412564 - 37412526
Alignment:
Q  2 aaagagaggaccaagtaccttagaggagtgctccagttg 40  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  37412564 aaagagagatccaagtaccttagaggagtgctccagttg 37412526  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 37436590 - 37436632
Alignment:
Q  13 caagtaccttagaggagtgctccagttggagtgtgggagttga 55  Q
    |||||||||||||||||||||||||||||| | ||| ||||||    
T  37436590 caagtaccttagaggagtgctccagttggactttggaagttga 37436632  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 37640755 - 37640797
Alignment:
Q  13 caagtaccttagaggagtgctccagttggagtgtgggagttga 55  Q
    |||||||||||||||||||||||||||||| | ||| ||||||    
T  37640755 caagtaccttagaggagtgctccagttggactttggaagttga 37640797  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 37429616 - 37429653
Alignment:
Q  5 gagaggaccaagtaccttagaggagtgctccagttgga 42  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  37429616 gagaggtccaagtaccttaggggagtgctccagttgga 37429653  T

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Target: chr5; HSP #10
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 39
Target Start/End: Complemental strand, 37392236 - 37392209
Alignment:
Q  12 ccaagtaccttagaggagtgctccagtt 39  Q
    ||||||||||||||||||||||||||||    
T  37392236 ccaagtaccttagaggagtgctccagtt 37392209  T

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Target: chr5; HSP #11
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 37381621 - 37381583
Alignment:
Q  4 agagaggaccaagtaccttagaggagtgctccagttgga 42  Q
    ||||||| |||||||||| | ||||||||||||||||||    
T  37381621 agagaggtccaagtacctcaaaggagtgctccagttgga 37381583  T

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Target: chr5; HSP #12
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 37595207 - 37595249
Alignment:
Q  13 caagtaccttagaggagtgctccagttggagtgtgggagttga 55  Q
    |||||||||||||||||||||| ||||||| | ||| ||||||    
T  37595207 caagtaccttagaggagtgctcaagttggactttggaagttga 37595249  T

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Target: chr4 (Bit Score: 34; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24217029 - 24216988
Alignment:
Q  1 gaaagagaggaccaagtaccttagaggagtgctccagttgga 42  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  24217029 gaaagagaggtccaagtaccttaggggagtgctccagttgga 24216988  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 16842162 - 16842111
Alignment:
Q  4 agagaggaccaagtaccttagaggagtgctccagttggagtgtgggagttga 55  Q
    |||||||  |||||||||||||||||||||||||||||| | ||| ||||||    
T  16842162 agagaggtacaagtaccttagaggagtgctccagttggattttggaagttga 16842111  T

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Target: chr3 (Bit Score: 27; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 14553921 - 14553963
Alignment:
Q  13 caagtaccttagaggagtgctccagttggagtgtgggagttga 55  Q
    |||||||||||||||||| ||||||||||| | ||| ||||||    
T  14553921 caagtaccttagaggagtactccagttggattttggaagttga 14553963  T

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