View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5812-3 (Length: 177)
Name: Solexa-NF5812-3
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5812-3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 4e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 4e-89
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 16916631 - 16916800
Alignment:
| Q |
8 |
aggcagagtggaaaacctggcaatggagatcaatcaacgacttgtacctgaacggagcatttttcagacaaagcggagctgagctgactaacagaccatt |
107 |
Q |
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| T |
16916631 |
aggcagagtggaaaacctggcaatggagatcaatcaacgacttgtacctgaacggagcatttttcagacaaagcggagctgagctgattaacagaccatt |
16916730 |
T |
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| Q |
108 |
ctcaaataaggacatgatcaaagctaagcctggatcttatgttggaaggcttactcgttattctcgcagc |
177 |
Q |
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| T |
16916731 |
ctcaaataaggacatgatcaaagctaagcctggatcttatgttggaaggcttactcgttattctcgcagc |
16916800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 6e-48
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 16912235 - 16912391
Alignment:
| Q |
15 |
gtggaaaacctggcaatggagatcaatcaacgacttgtacctgaacggagcatttttcagacaaagcggagctgagctgactaacagaccattctcaaat |
114 |
Q |
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| T |
16912235 |
gtggaaatcctggcaatggagatcaatcaacgacgtgtacctgaacggagcatttttcagacaaggaggacctgagttgaaagacagaccattctcaaga |
16912334 |
T |
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| Q |
115 |
aaggacatgatcaaagctaagcctggatcttatgttggaaggcttactcgttattct |
171 |
Q |
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| T |
16912335 |
aaggacatgatcaaatctaggcccggaacttatgttggaaggcttactcgttattct |
16912391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 25006431 - 25006399
Alignment:
| Q |
16 |
tggaaaacctggcaatggagatcaatcaacgac |
48 |
Q |
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| T |
25006431 |
tggaaaacctggcaatggagatcaatcaacgac |
25006399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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