View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5812-4 (Length: 151)

Name: Solexa-NF5812-4
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5812-4
Solexa-NF5812-4
[»] chr4 (3 HSPs)
chr4 (21-105)||(4884328-4884412)
chr4 (106-151)||(10546875-10546920)
chr4 (29-63)||(4645940-4645974)
[»] chr1 (2 HSPs)
chr1 (102-151)||(30031941-30031990)
chr1 (32-63)||(30557626-30557657)
[»] chr7 (1 HSPs)
chr7 (21-61)||(4074220-4074260)
[»] chr2 (1 HSPs)
chr2 (29-60)||(15928391-15928422)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 4e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 4884412 - 4884328
Alignment:
Q  21 tagtttgtattacttttaaccaaaatcaattttacagaatcaaaatcaactatcaccaccgcacaaccaaacacaagctaagatc 105  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4884412 tagtttgaattacttttaaccaaaatcaattttacagaatcaaaatcaactatcaccaccacacaaccaaacacaagctaagatc 4884328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 10546875 - 10546920
Alignment:
Q  106 tcttatctcgggctgtgcctcttggtcttgatgagttcaagagcag 151  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||    
T  10546875 tcttatctcgggctgtgcctcttggtcttaatgaattcaagagcag 10546920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 4645940 - 4645974
Alignment:
Q  29 attacttttaaccaaaatcaattttacagaatcaa 63  Q
    |||||||||||||||||| ||||||||||||||||    
T  4645940 attacttttaaccaaaataaattttacagaatcaa 4645974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 6e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 30031990 - 30031941
Alignment:
Q  102 gatctcttatctcgggctgtgcctcttggtcttgatgagttcaagagcag 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30031990 gatctcttatctcgggctgtgcctcttggtcttgatgagttcaagagcag 30031941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 63
Target Start/End: Original strand, 30557626 - 30557657
Alignment:
Q  32 acttttaaccaaaatcaattttacagaatcaa 63  Q
    |||||||||||||||||||| |||||||||||    
T  30557626 acttttaaccaaaatcaattctacagaatcaa 30557657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 4074260 - 4074220
Alignment:
Q  21 tagtttgtattacttttaaccaaaatcaattttacagaatc 61  Q
    ||||||| || ||||||||||||||||||||||| ||||||    
T  4074260 tagtttgaatcacttttaaccaaaatcaattttaaagaatc 4074220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 60
Target Start/End: Complemental strand, 15928422 - 15928391
Alignment:
Q  29 attacttttaaccaaaatcaattttacagaat 60  Q
    ||||||||||||||||||||||| ||||||||    
T  15928422 attacttttaaccaaaatcaattctacagaat 15928391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University