View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5812-8 (Length: 131)
Name: Solexa-NF5812-8
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5812-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 5e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 20179433 - 20179303
Alignment:
| Q |
1 |
gacacgtgtcgtatctaacacgacattaacacataattatactgaattatacgattttcttaaactattagttacgttaacgtgtcagtgtcgtatctga |
100 |
Q |
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| T |
20179433 |
gacacgtgtcgtatctgatacaacatcaacacataattatactgaattatatgattttcttaaactattaattacgttaacgtgtcagtgtcgtatctga |
20179334 |
T |
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| Q |
101 |
tatctgatatcggtgtttgtatccgtgtttc |
131 |
Q |
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| T |
20179333 |
tatctgatatcggtgtttgtatccgtgtttc |
20179303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 49652971 - 49653025
Alignment:
| Q |
18 |
acacgacattaacacataattatactgaattatacgattttcttaaactattagt |
72 |
Q |
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| T |
49652971 |
acacgacaccaacatataattatactgaattatctgattttcttaaattattagt |
49653025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 35999336 - 35999376
Alignment:
| Q |
33 |
ataattatactgaattatacgattttcttaaactattagtt |
73 |
Q |
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| T |
35999336 |
ataattatactaaattatatgattttcttaaattattagtt |
35999376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 7758371 - 7758328
Alignment:
| Q |
29 |
acacataattatactgaattatacgattttcttaaactattagt |
72 |
Q |
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| T |
7758371 |
acacataattatactgaattatataattttctaaaattattagt |
7758328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 28; Significance: 0.0000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 4040511 - 4040472
Alignment:
| Q |
33 |
ataattatactgaattatacgattttcttaaactattagt |
72 |
Q |
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| T |
4040511 |
ataattatactgaataatgcgattttcttaaattattagt |
4040472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 8389486 - 8389525
Alignment:
| Q |
33 |
ataattatactgaattatacgattttcttaaactattagt |
72 |
Q |
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||||||| ||||||||||| |||||||||||| ||||||| |
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| T |
8389486 |
ataattacactgaattatatgattttcttaaattattagt |
8389525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 17411882 - 17411913
Alignment:
| Q |
33 |
ataattatactgaattatacgattttcttaaa |
64 |
Q |
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||||||||||||||||||| |||||||||||| |
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| T |
17411882 |
ataattatactgaattatatgattttcttaaa |
17411913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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