View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5812-9 (Length: 130)

Name: Solexa-NF5812-9
Description: NF5812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5812-9
Solexa-NF5812-9
[»] chr8 (2 HSPs)
chr8 (2-47)||(31268413-31268458)
chr8 (56-121)||(41415534-41415599)
[»] chr2 (2 HSPs)
chr2 (56-118)||(41692493-41692555)
chr2 (47-121)||(42970592-42970666)
[»] chr3 (1 HSPs)
chr3 (56-121)||(4475746-4475811)


Alignment Details
Target: chr8 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 31268458 - 31268413
Alignment:
Q  2 aaggggatcataatcataactttttataaagataaagggtctaaag 47  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  31268458 aaggggatcataatcacaactttttataaagataaagggtctaaag 31268413  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 41415599 - 41415534
Alignment:
Q  56 gacaaacggtcggtttcggtcgagggcggaccgaaaccaccaatccgtttgtacccacggttgagc 121  Q
    ||||||||||||||||||||||  | ||||||||||   ||||||||||   ||||||||||||||    
T  41415599 gacaaacggtcggtttcggtcggtgacggaccgaaaatgccaatccgttcaaacccacggttgagc 41415534  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 41692493 - 41692555
Alignment:
Q  56 gacaaacggtcggtttcggtcgagggcggaccgaaaccaccaatccgtttgtacccacggttg 118  Q
    ||||||||||||||||| ||||  | |||||||||||||||||| |||||| |||||||||||    
T  41692493 gacaaacggtcggtttctgtcggcgacggaccgaaaccaccaattcgtttgaacccacggttg 41692555  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 42970666 - 42970592
Alignment:
Q  47 gtaggggcagacaaacggtcggtttcggtcgagggcggaccgaaaccaccaatccgtttgtacccacggttgagc 121  Q
    |||||||  ||||||||||||||||||||||  | ||||||||||   ||||||||||   ||||||||||||||    
T  42970666 gtaggggtggacaaacggtcggtttcggtcggcgacggaccgaaaatgccaatccgttcaaacccacggttgagc 42970592  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 4475746 - 4475811
Alignment:
Q  56 gacaaacggtcggtttcggtcgagggcggaccgaaaccaccaatccgtttgtacccacggttgagc 121  Q
    ||||||||||||||||||||||  | ||||||||||   ||||||||||   ||||||||||||||    
T  4475746 gacaaacggtcggtttcggtcggcgacggaccgaaaatgccaatccgttcaaacccacggttgagc 4475811  T

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