View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5813-11 (Length: 157)
Name: Solexa-NF5813-11
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5813-11 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 129; Significance: 4e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 46649350 - 46649194
Alignment:
| Q |
1 |
gagatgaagaacaattgcggagcatcggggagagaagaaagcgcagcaatcatggcagaaccccattacagggctctgataccatgtgaaaactgaaagt |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| | |||| |
|
|
| T |
46649350 |
gagatgaagaacaattgcggagctttggggagaaaagaaagcgcagcaatcatggaagaaccccattacagggctctgataccatgtaaaaaccggaagt |
46649251 |
T |
|
| Q |
101 |
aaaactccattaatggagagaagaagcttgagaaagaagaaaggtttattctcattg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46649250 |
aaaactccattaatggagagaagaagcttgagaaagaagaaaggtttattctcattg |
46649194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 16448558 - 16448495
Alignment:
| Q |
85 |
tgtgaaaactgaaagtaaaactccattaatggagagaagaagcttgagaaagaagaaaggttta |
148 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |||||| || ||||||||||||||| |
|
|
| T |
16448558 |
tgtgaaaactggaagtaaaattccattaatggagagaaaaagcttaaggaagaagaaaggttta |
16448495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 16458121 - 16458054
Alignment:
| Q |
85 |
tgtgaaaactgaaagtaaaactccattaatggagagaagaagcttgagaaagaagaaaggtttattct |
152 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| || ||| || ||||||||||||||||||| |
|
|
| T |
16458121 |
tgtgaaaactggaagtaaaattccattaatggagagaaaaaacttaaggaagaagaaaggtttattct |
16458054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 2673573 - 2673621
Alignment:
| Q |
43 |
gcagcaatcatggcagaaccccattacagggctctgataccatgtgaaa |
91 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||||| ||||||||| |
|
|
| T |
2673573 |
gcagcaacaatggcaggaccccattacagggcactgatatcatgtgaaa |
2673621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 20842595 - 20842647
Alignment:
| Q |
102 |
aaactccattaatggagagaagaagcttgagaaagaagaaaggtttattctca |
154 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||| ||||| ||||||||||| |
|
|
| T |
20842595 |
aaactccattgatggagagaaaaagcttgaagaaggagaaaagtttattctca |
20842647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University