View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5813-14 (Length: 143)
Name: Solexa-NF5813-14
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5813-14 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 3e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 49425257 - 49425122
Alignment:
| Q |
8 |
tcaccgctatattcaaagaacctatgttttcctgctctgatttgatccttgtaccatgctgaagttgttacagatttggcactaatatttttcaaagtaa |
107 |
Q |
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| T |
49425257 |
tcaccgctatattcaaagaacctatgttttcctgctctgatttgatccttgtaccatgctgaagttgttacagatttggcactaatatttttcaaagtaa |
49425158 |
T |
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| Q |
108 |
ttaaaattatggttgcatgttaattttagatttttc |
143 |
Q |
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| T |
49425157 |
ttaaaattatggttgcatgttaattttagatttttc |
49425122 |
T |
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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 49417014 - 49417093
Alignment:
| Q |
13 |
gctatattcaaagaacctatgttttcctgctctgatttgatccttgtaccatgct-gaagttgttacagatttggcacta |
91 |
Q |
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| T |
49417014 |
gctatttttaaagaacctatatttttctgctcagatttcatccttgtacaatactccaagttgttacagatttggtacta |
49417093 |
T |
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