View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5813-15 (Length: 141)

Name: Solexa-NF5813-15
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5813-15
Solexa-NF5813-15
[»] chr2 (2 HSPs)
chr2 (41-103)||(12568911-12568973)
chr2 (7-54)||(12569602-12569649)
[»] chr1 (4 HSPs)
chr1 (106-139)||(46655480-46655513)
chr1 (106-141)||(46649010-46649045)
chr1 (107-141)||(16448305-16448339)
chr1 (107-141)||(16457868-16457902)
[»] chr7 (1 HSPs)
chr7 (62-103)||(46965688-46965729)


Alignment Details
Target: chr2 (Bit Score: 59; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 12568973 - 12568911
Alignment:
Q  41 tctacctagtcgtatgtcttgaacattgaataatggtattctcttcggtcgacatgcacatgc 103  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12568973 tctacctaatcgtatgtcttgaacattgaataatggtattctcttcggtcgacatgcacatgc 12568911  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 12569649 - 12569602
Alignment:
Q  7 aataacagtgatggccaacataacatagtctttttctacctagtcgta 54  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||    
T  12569649 aataacagtaatggccaacatagcatagtctttttctacctagtcgta 12569602  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 46655480 - 46655513
Alignment:
Q  106 ttgaagttagtatagagaagagttagttagttaa 139  Q
    ||||||||||||||||||||||||||||||||||    
T  46655480 ttgaagttagtatagagaagagttagttagttaa 46655513  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 46649010 - 46649045
Alignment:
Q  106 ttgaagttagtatagagaagagttagttagttaact 141  Q
    ||||||||||||| ||||||||||||||||||||||    
T  46649010 ttgaagttagtattgagaagagttagttagttaact 46649045  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 16448305 - 16448339
Alignment:
Q  107 tgaagttagtatagagaagagttagttagttaact 141  Q
    |||||||||||||||||||||||||||||| ||||    
T  16448305 tgaagttagtatagagaagagttagttagtaaact 16448339  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 16457868 - 16457902
Alignment:
Q  107 tgaagttagtatagagaagagttagttagttaact 141  Q
    |||||||||||||||||||||||||||||| ||||    
T  16457868 tgaagttagtatagagaagagttagttagtaaact 16457902  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 46965688 - 46965729
Alignment:
Q  62 aacattgaataatggtattctcttcggtcgacatgcacatgc 103  Q
    |||||||||||||| |||||||| |||| |||||||||||||    
T  46965688 aacattgaataatgatattctctccggttgacatgcacatgc 46965729  T

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