View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5813-19 (Length: 137)
Name: Solexa-NF5813-19
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5813-19 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 4e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 45860759 - 45860623
Alignment:
| Q |
1 |
gagcatggaaggctttgaattggactcagaagttgagtttactgacgatagttgtccgtggaataacatcttcatcagacatttctacagataagcttga |
100 |
Q |
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| T |
45860759 |
gagcatggaaggctttgaattggactcagaagttgagtttattgacgatagttgtccgtggaataacatcttcatcagacatttctacagataagcttga |
45860660 |
T |
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| Q |
101 |
ggtcacttctcttgcctagaatgtcaatctcaatttt |
137 |
Q |
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| T |
45860659 |
ggtcatttctcttgcctagaatgtcaatctcaatttt |
45860623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 3e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 27004463 - 27004327
Alignment:
| Q |
1 |
gagcatggaaggctttgaattggactcagaagttgagtttactgacgatagttgtccgtggaataacatcttcatcagacatttctacagataagcttga |
100 |
Q |
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| T |
27004463 |
gagcatggaaggctttgaattggactcagaagttgagtttattgacgatagttatccatggaataacatctttatcagagatttctacaaataagcttga |
27004364 |
T |
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| Q |
101 |
ggtcacttctcttgcctagaatgtcaatctcaatttt |
137 |
Q |
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| T |
27004363 |
ggttacttctcttgcctagaatgtcaatctcaatttt |
27004327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 3e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 35536780 - 35536916
Alignment:
| Q |
1 |
gagcatggaaggctttgaattggactcagaagttgagtttactgacgatagttgtccgtggaataacatcttcatcagacatttctacagataagcttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| |||||| ||||||||| |||||||||| |
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| T |
35536780 |
gagcatggaaggctttgaattggactcagaagttgagtttattgacgatagttatccatggaataacatctttatcagagatttctacaaataagcttga |
35536879 |
T |
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| Q |
101 |
ggtcacttctcttgcctagaatgtcaatctcaatttt |
137 |
Q |
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| T |
35536880 |
ggttacttctcttgcctagaatgtcaatctcaatttt |
35536916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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