View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5813-2 (Length: 238)

Name: Solexa-NF5813-2
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5813-2
Solexa-NF5813-2
[»] chr4 (2 HSPs)
chr4 (2-238)||(30170916-30171152)
chr4 (101-149)||(55557702-55557750)
[»] chr1 (2 HSPs)
chr1 (63-149)||(38207155-38207240)
chr1 (101-149)||(36521305-36521353)
[»] scaffold0134 (1 HSPs)
scaffold0134 (101-149)||(4246-4294)
[»] chr5 (2 HSPs)
chr5 (101-149)||(30345251-30345299)
chr5 (101-149)||(10026572-10026620)
[»] scaffold0262 (1 HSPs)
scaffold0262 (101-149)||(20597-20645)
[»] chr8 (1 HSPs)
chr8 (101-149)||(21112322-21112370)
[»] chr7 (1 HSPs)
chr7 (101-149)||(42233584-42233632)
[»] chr2 (1 HSPs)
chr2 (101-149)||(24267648-24267696)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 30171152 - 30170916
Alignment:
Q  2 ccacaatggagctcaaaggatcaagtgtcgcatcttaagggtgaaaaatatacgattttcgaacacaagattctagagggaaattttggacagccacaga 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  30171152 ccacaatggagctcaaaggatcaagtgtcgcatcttaagggtgaaaaatatacaattttcgaacacaagattctagagggaaattttggacagccacaaa 30171053  T
Q  102 gaagtgcaaatcatatgtgggacaagatgacatatgtgattagaaaagatgtaaattttggtcctttaaatgtttctctcacgacttttaatccatactt 201  Q
    ||||||||||||||||||||  |||||| |||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30171052 gaagtgcaaatcatatgtggatcaagataacatatgtgattagaaaataagtaaattttggtccttcaaatgtttctctcacgacttttaatccatactt 30170953  T
Q  202 ttaagtaaactcctattatccttgaaaactttgaatt 238  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  30170952 ttaagtaaactcatattatccttgaaaattttgaatt 30170916  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 55557702 - 55557750
Alignment:
Q  101 agaagtgcaaatcatatgtgggacaagatgacatatgtgattagaaaag 149  Q
    ||||||| |||| ||| |||| ||||||||||||||| |||||||||||    
T  55557702 agaagtgaaaatgatacgtggaacaagatgacatatgagattagaaaag 55557750  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 38207240 - 38207155
Alignment:
Q  63 aacacaagattctagagggaaattttggacagccacagagaagtgcaaatcatatgtgggacaagatgacatatgtgattagaaaag 149  Q
    ||||||| ||||||||| ||| ||| ||||| |||| ||||||||||||| |||  |||||||||||  ||||||||||||||||||    
T  38207240 aacacaatattctagagagaagtttcggacaaccac-gagaagtgcaaataatacttgggacaagatagcatatgtgattagaaaag 38207155  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 36521353 - 36521305
Alignment:
Q  101 agaagtgcaaatcatatgtgggacaagatgacatatgtgattagaaaag 149  Q
    ||||||| |||| ||| |||| ||||||||||||||| |||||||||||    
T  36521353 agaagtgaaaatgatacgtggaacaagatgacatatgagattagaaaag 36521305  T

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Target: scaffold0134 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 4246 - 4294
Alignment:
Q  101 agaagtgcaaatcatatgtgggacaagatgacatatgtgattagaaaag 149  Q
    ||||||| |||| |||||||| ||||||||||||||| |||||||||||    
T  4246 agaagtgaaaatgatatgtggaacaagatgacatatgagattagaaaag 4294  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 30345251 - 30345299
Alignment:
Q  101 agaagtgcaaatcatatgtgggacaagatgacatatgtgattagaaaag 149  Q
    ||||||| |||| |||||||| ||||||||||||||| |||||||||||    
T  30345251 agaagtgaaaatgatatgtggaacaagatgacatatgagattagaaaag 30345299  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 10026620 - 10026572
Alignment:
Q  101 agaagtgcaaatcatatgtgggacaagatgacatatgtgattagaaaag 149  Q
    ||||||| |||| ||| |||| ||||||||||||||| |||||||||||    
T  10026620 agaagtgaaaatgatacgtggaacaagatgacatatgagattagaaaag 10026572  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 20645 - 20597
Alignment:
Q  101 agaagtgcaaatcatatgtgggacaagatgacatatgtgattagaaaag 149  Q
    ||||||| |||| ||| |||| ||||||||||||||| |||||||||||    
T  20645 agaagtgaaaatgatacgtggaacaagatgacatatgagattagaaaag 20597  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 21112322 - 21112370
Alignment:
Q  101 agaagtgcaaatcatatgtgggacaagatgacatatgtgattagaaaag 149  Q
    ||||||| |||| ||| |||| ||||||||||||||| |||||||||||    
T  21112322 agaagtgaaaatgatacgtggaacaagatgacatatgagattagaaaag 21112370  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 42233632 - 42233584
Alignment:
Q  101 agaagtgcaaatcatatgtgggacaagatgacatatgtgattagaaaag 149  Q
    ||||||| |||| ||| |||| ||||||||||||||| |||||||||||    
T  42233632 agaagtgaaaatgatacgtggaacaagatgacatatgagattagaaaag 42233584  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 24267648 - 24267696
Alignment:
Q  101 agaagtgcaaatcatatgtgggacaagatgacatatgtgattagaaaag 149  Q
    ||||||| |||| ||| |||| ||||||||||||||| |||||||||||    
T  24267648 agaagtgaaaatgatacgtggaacaagatgacatatgagattagaaaag 24267696  T

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