View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5813-20 (Length: 135)
Name: Solexa-NF5813-20
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5813-20 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 8e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 8e-56
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 7779097 - 7778973
Alignment:
| Q |
8 |
ctgacactattacaggtgtgttcaattaccatataatattattaaacattactgatgtgttttgattttctgtttagctttatcaaagaagcatttgaca |
107 |
Q |
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| T |
7779097 |
ctgacactattacaggtgtgttcaattaccatata---ttattaaacattactgatgtgttttgattttctgtttagctttatcaaagaagcatttaaca |
7779001 |
T |
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| Q |
108 |
gttgatacaccgcatttatgtcggtcta |
135 |
Q |
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| T |
7779000 |
gttgatacaccgcatttatgtcggtcta |
7778973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 3e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 30275786 - 30275662
Alignment:
| Q |
8 |
ctgacactattacaggtgtgttcaattaccatataatattattaaacattactgatgtgttttgattttctgtttagctttatcaaagaagcatttgaca |
107 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
30275786 |
ctgacactattacaggtgtgttcaattaccataca---ttattaaacattactgatgtgttttgattttctgtttagctttataaaagaagcatttaaca |
30275690 |
T |
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| Q |
108 |
gttgatacaccgcatttatgtcggtcta |
135 |
Q |
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| T |
30275689 |
gttgatacaccacatttatgttggtcta |
30275662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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