View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5813-21 (Length: 135)
Name: Solexa-NF5813-21
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5813-21 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 8e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 45860322 - 45860449
Alignment:
| Q |
8 |
acatgggccgagtagaatccaaataggcgcaggttccaaggatccctcaaccaaaaccgtagcttagtaggctgccaagacagtggaaatcatagctaaa |
107 |
Q |
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| T |
45860322 |
acatgggccgagtagaatccaaaatggcgcaggttccaaggatccctcaaccaaaaccgtagcttagtaggctgccaagacagtggaaatcatagctaaa |
45860421 |
T |
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| Q |
108 |
tggggagaaggaatagcataaaaaggaa |
135 |
Q |
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| T |
45860422 |
tggggagaaggaatagcataaaaaggaa |
45860449 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 27004067 - 27004151
Alignment:
| Q |
29 |
aataggcgcaggttccaaggatccctcaaccaaaaccgtagcttagtaggctgccaagacagtggaaatcatagctaaatgggga |
113 |
Q |
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| T |
27004067 |
aataggcgtaggttccaaggataccccaactaaaaccgtagcttagtagggtgcctacagagcagaaatcttagctaaatgggga |
27004151 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 35537176 - 35537092
Alignment:
| Q |
29 |
aataggcgcaggttccaaggatccctcaaccaaaaccgtagcttagtaggctgccaagacagtggaaatcatagctaaatgggga |
113 |
Q |
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| T |
35537176 |
aataggcgtaggttccaaggataccccaacaaaaaccgtagcttagtagggtgcctacagagcagaaatcttagctaaatgggga |
35537092 |
T |
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