View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5813-28 (Length: 122)
Name: Solexa-NF5813-28
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5813-28 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 1e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 41806362 - 41806241
Alignment:
| Q |
1 |
agaaaagtcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgtttttctctctccaa |
100 |
Q |
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| T |
41806362 |
agaaaagtcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgtttttttctctccaa |
41806263 |
T |
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| Q |
101 |
agttagatgcatttccttttcc |
122 |
Q |
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| T |
41806262 |
agttagatgcatttccttttcc |
41806241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 41800237 - 41800119
Alignment:
| Q |
1 |
agaaaagtcaggaaaaa-gatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgtttttctctctcca |
99 |
Q |
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| T |
41800237 |
agaaaattcaggaaaaaagatgtaggagctcaaacgaggtagaaaaacacaagccgtgaatcttctaaatat----cttacttctgttttttattctcca |
41800142 |
T |
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| Q |
100 |
aagttagatgcatttccttttcc |
122 |
Q |
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| T |
41800141 |
aagtgatgtgcatttccttttcc |
41800119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 4e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 24632035 - 24631955
Alignment:
| Q |
8 |
tcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgttt |
88 |
Q |
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| T |
24632035 |
tcaggaaaaagatccaggagcttgaatgaggtagacagatacaagccacaaatcttctaaatatttcacttactaatgttt |
24631955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 24685420 - 24685331
Alignment:
| Q |
8 |
tcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgtttttctctctc |
97 |
Q |
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| T |
24685420 |
tcaggaaaaagacctaggagctcgactgaggtagacaaacaaaagccgcgaatcttctaaatgttgcacttaccactgtttttctctctc |
24685331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 88
Target Start/End: Complemental strand, 24653664 - 24653634
Alignment:
| Q |
58 |
aatcttctaaatatttcacttactactgttt |
88 |
Q |
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| T |
24653664 |
aatcttctaaatatttcacttactactgttt |
24653634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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