View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5813-3 (Length: 206)
Name: Solexa-NF5813-3
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5813-3 |
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Alignment Details
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 30170436 - 30170496
Alignment:
| Q |
77 |
taacatataggaattgtttagaatcttgttgcaaagtaggtacaccctataacatacaaag |
137 |
Q |
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| T |
30170436 |
taacatataggaattgtttagaatcttgttgcaaagtaggtacaccctataacatacaaag |
30170496 |
T |
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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 30170517 - 30170556
Alignment:
| Q |
167 |
acaaaatacaaagaatcttattaaatataagtttttgatc |
206 |
Q |
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| T |
30170517 |
acaaaatacaaagaatcttattaaatataagtttttgatc |
30170556 |
T |
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