View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5813-33 (Length: 103)

Name: Solexa-NF5813-33
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5813-33
Solexa-NF5813-33
[»] chr3 (1 HSPs)
chr3 (1-48)||(47433514-47433561)
[»] chr4 (2 HSPs)
chr4 (1-48)||(17321257-17321304)
chr4 (1-48)||(17326457-17326504)
[»] chr1 (1 HSPs)
chr1 (1-48)||(17977050-17977097)
[»] chr2 (1 HSPs)
chr2 (8-48)||(20244992-20245032)
[»] chr8 (1 HSPs)
chr8 (19-48)||(1377237-1377266)


Alignment Details
Target: chr3 (Bit Score: 44; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47433514 - 47433561
Alignment:
Q  1 agaagaaatggaacgattgagaagaaaagggggaaatgagaaacccta 48  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  47433514 agaagaaaaggaacgattgagaagaaaagggggaaatgagaaacccta 47433561  T

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Target: chr4 (Bit Score: 36; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 17321304 - 17321257
Alignment:
Q  1 agaagaaatggaacgattgagaagaaaagggggaaatgagaaacccta 48  Q
    |||||||| ||||||||| |||||||| ||||||||||||||||||||    
T  17321304 agaagaaaaggaacgattaagaagaaatgggggaaatgagaaacccta 17321257  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17326457 - 17326504
Alignment:
Q  1 agaagaaatggaacgattgagaagaaaagggggaaatgagaaacccta 48  Q
    ||||| || |||||||||||||||||||||| ||||||||||||||||    
T  17326457 agaaggaaaggaacgattgagaagaaaagggagaaatgagaaacccta 17326504  T

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Target: chr1 (Bit Score: 36; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 17977097 - 17977050
Alignment:
Q  1 agaagaaatggaacgattgagaagaaaagggggaaatgagaaacccta 48  Q
    ||||| || |||||||||||||||||||||| ||||||||||||||||    
T  17977097 agaaggaaaggaacgattgagaagaaaagggagaaatgagaaacccta 17977050  T

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Target: chr2 (Bit Score: 33; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 20244992 - 20245032
Alignment:
Q  8 atggaacgattgagaagaaaagggggaaatgagaaacccta 48  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  20244992 atggaacaattcagaagaaaagggggaaatgagaaacccta 20245032  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 1377266 - 1377237
Alignment:
Q  19 gagaagaaaagggggaaatgagaaacccta 48  Q
    ||||||||||||||||||||||||||||||    
T  1377266 gagaagaaaagggggaaatgagaaacccta 1377237  T

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