View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5813-36 (Length: 87)
Name: Solexa-NF5813-36
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5813-36 |
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| [»] scaffold0009 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 63; Significance: 5e-28; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 91077 - 91163
Alignment:
| Q |
1 |
aagattcactgactatgtttccactttgggtttctctcacagcatctctgatcaccctttattagtttttcatcgtgtccttgatac |
87 |
Q |
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| T |
91077 |
aagattcactgactatgttgccacattgggtttctctcacaacatctctgatcactctttattcgtttttcatcgtggccttgatac |
91163 |
T |
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Target: chr1 (Bit Score: 63; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 25624749 - 25624663
Alignment:
| Q |
1 |
aagattcactgactatgtttccactttgggtttctctcacagcatctctgatcaccctttattagtttttcatcgtgtccttgatac |
87 |
Q |
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| T |
25624749 |
aagattcactgactatgttgccacattgggtttctctcacaacatctctgatcactctttattcgtttttcatcgtggccttgatac |
25624663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 47250398 - 47250312
Alignment:
| Q |
1 |
aagattcactgactatgtttccactttgggtttctctcacagcatctctgatcaccctttattagtttttcatcgtgtccttgatac |
87 |
Q |
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| T |
47250398 |
aagattcactaactatgttgccacattgggtttctctcgcagcatctctgatcactctttattcgtttttcattgtggccttgatac |
47250312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 4784780 - 4784695
Alignment:
| Q |
1 |
aagattcactgactatgtttccactttgggtttctctcacagcatctctgatcaccctttattagtttttcatcgtgtccttgata |
86 |
Q |
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| T |
4784780 |
aagattcactgattatgttgccacattgggtttctctcacaacatctatgatcactctttattcatttttcatcgtgtccttgata |
4784695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-21
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 10534313 - 10534239
Alignment:
| Q |
1 |
aagattcactgactatgtttccactttgggtttctctcacagcatctctgatcaccctttattagtttttcatcg |
75 |
Q |
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| T |
10534313 |
aagattcaccaactatgttgccacattgggtttctctcacagcatctctgatcactctttattcgtttttcatcg |
10534239 |
T |
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