View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5813-4 (Length: 199)
Name: Solexa-NF5813-4
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5813-4 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 35909219 - 35909021
Alignment:
| Q |
1 |
gataacattgctctaagcatgactggtggaaacattgatgttgcatgccatgaaaactcgaaatgaagctcaagaatctataaaatctaagaaaacgatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35909219 |
gataacattgctctaagcatgactggtggaaacattgatgttgcatgccatgaaaactcgatatgaagctcaagaatctataaaatctaagaaaacgatg |
35909120 |
T |
|
| Q |
101 |
aatcaacaagaaattgttgtgaataaaaagcaattatgaaaaattgcaacgaagatgtaaagaaaatcttatgattctgcaagaaccttcaagtatgcg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35909119 |
aatcaacaagaaattgttgtgaataaaaagcaattatgaaaaattgcaacgaagatgtaaagaaaatcttatgattctgcaagaaccttcaagtatgcg |
35909021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University