View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5813-40 (Length: 80)
Name: Solexa-NF5813-40
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5813-40 |
 | |
|
| [»] scaffold0595 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0595 (Bit Score: 63; Significance: 5e-28; HSPs: 1)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 1618 - 1684
Alignment:
| Q |
6 |
caaaggcgcaaaactcagaatcttgcatattcctacgtaaatgagatgcacgaatagatgggaggga |
72 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1618 |
caaaggcgcaaaactcagaatcttgcaaattcctacgtaaatgagatgcacgaatagatgggaggga |
1684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 8328414 - 8328348
Alignment:
| Q |
6 |
caaaggcgcaaaactcagaatcttgcatattcctacgtaaatgagatgcacgaatagatgggaggga |
72 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8328414 |
caaaggcgcaaaactcagaatcttgcaaattcctacgtaaatgagatgcacgaatagatgggaggga |
8328348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University