View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5813-6 (Length: 181)

Name: Solexa-NF5813-6
Description: NF5813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5813-6
Solexa-NF5813-6
[»] chr3 (31 HSPs)
chr3 (13-170)||(9236050-9236207)
chr3 (9-132)||(21662888-21663010)
chr3 (15-132)||(54537445-54537561)
chr3 (15-109)||(52864975-52865069)
chr3 (9-98)||(23222982-23223071)
chr3 (13-126)||(51723386-51723498)
chr3 (9-132)||(51516960-51517081)
chr3 (9-132)||(53441931-53442053)
chr3 (14-91)||(25954051-25954128)
chr3 (9-129)||(12747721-12747840)
chr3 (9-98)||(19649603-19649692)
chr3 (7-64)||(20028493-20028549)
chr3 (9-117)||(12064933-12065040)
chr3 (14-126)||(44518044-44518155)
chr3 (9-102)||(2544489-2544583)
chr3 (13-129)||(45010778-45010893)
chr3 (9-103)||(8266263-8266355)
chr3 (13-63)||(9197109-9197159)
chr3 (14-132)||(36985158-36985275)
chr3 (14-132)||(37010597-37010714)
chr3 (36-130)||(49885383-49885475)
chr3 (41-130)||(5177822-5177909)
chr3 (9-118)||(25910215-25910323)
chr3 (10-75)||(47720727-47720792)
chr3 (21-117)||(29290795-29290890)
chr3 (36-100)||(32711253-32711317)
chr3 (13-125)||(43448967-43449078)
chr3 (68-132)||(53703813-53703877)
chr3 (9-60)||(13622511-13622562)
chr3 (70-137)||(21662971-21663037)
chr3 (71-130)||(43901667-43901725)
[»] chr2 (45 HSPs)
chr2 (9-117)||(11030216-11030323)
chr2 (9-132)||(41153135-41153257)
chr2 (10-117)||(11182190-11182297)
chr2 (9-129)||(38554482-38554601)
chr2 (13-132)||(7943467-7943586)
chr2 (7-132)||(12873725-12873849)
chr2 (9-109)||(12962729-12962829)
chr2 (9-123)||(4410801-4410915)
chr2 (9-129)||(20555263-20555381)
chr2 (7-123)||(38983021-38983136)
chr2 (9-100)||(9152403-9152494)
chr2 (13-109)||(32457241-32457337)
chr2 (9-132)||(22333549-22333671)
chr2 (9-63)||(29988962-29989016)
chr2 (7-128)||(5281200-5281319)
chr2 (13-129)||(5109368-5109483)
chr2 (13-109)||(28248961-28249057)
chr2 (13-123)||(30758748-30758856)
chr2 (15-109)||(39445019-39445113)
chr2 (9-130)||(45034402-45034521)
chr2 (19-91)||(35728499-35728571)
chr2 (9-132)||(36881535-36881651)
chr2 (68-132)||(42698147-42698210)
chr2 (9-92)||(2936334-2936417)
chr2 (43-98)||(7833317-7833372)
chr2 (13-100)||(10204959-10205046)
chr2 (9-132)||(11794452-11794573)
chr2 (15-98)||(39118049-39118132)
chr2 (9-63)||(28494774-28494828)
chr2 (9-58)||(28014348-28014397)
chr2 (9-130)||(30761382-30761502)
chr2 (9-130)||(45571034-45571153)
chr2 (9-130)||(45574701-45574820)
chr2 (9-130)||(45578368-45578487)
chr2 (9-130)||(45582035-45582154)
chr2 (9-130)||(45585702-45585821)
chr2 (9-130)||(45589369-45589488)
chr2 (9-130)||(45593036-45593155)
chr2 (9-130)||(45596703-45596822)
chr2 (9-130)||(45600370-45600489)
chr2 (9-130)||(45604037-45604156)
chr2 (9-130)||(45607704-45607823)
chr2 (9-130)||(45611371-45611490)
chr2 (9-130)||(45615038-45615157)
chr2 (13-132)||(34447531-34447649)
[»] chr7 (36 HSPs)
chr7 (9-139)||(28677341-28677470)
chr7 (9-132)||(36245400-36245522)
chr7 (9-116)||(29365645-29365751)
chr7 (9-97)||(6838411-6838499)
chr7 (9-132)||(2523794-2523916)
chr7 (9-123)||(8566105-8566218)
chr7 (9-123)||(11668039-11668152)
chr7 (9-132)||(13807244-13807362)
chr7 (9-109)||(41850620-41850720)
chr7 (9-110)||(39153311-39153412)
chr7 (9-98)||(48838347-48838436)
chr7 (13-117)||(32811738-32811840)
chr7 (9-137)||(10007598-10007727)
chr7 (9-132)||(24163270-24163393)
chr7 (9-120)||(45533244-45533354)
chr7 (15-132)||(10462379-10462495)
chr7 (13-109)||(48082823-48082918)
chr7 (9-100)||(30869210-30869301)
chr7 (7-138)||(40142795-40142925)
chr7 (13-63)||(2680886-2680936)
chr7 (9-139)||(32811402-32811530)
chr7 (7-100)||(30823742-30823835)
chr7 (13-110)||(45441464-45441561)
chr7 (9-100)||(2399976-2400067)
chr7 (20-91)||(2610229-2610300)
chr7 (7-110)||(40176058-40176161)
chr7 (27-109)||(34117981-34118063)
chr7 (70-132)||(43174363-43174425)
chr7 (7-63)||(28298924-28298980)
chr7 (70-132)||(32811380-32811441)
chr7 (9-130)||(27231858-27231977)
chr7 (20-129)||(44682571-44682679)
chr7 (13-137)||(9979829-9979951)
chr7 (68-135)||(10674206-10674272)
chr7 (13-132)||(11668017-11668135)
chr7 (20-91)||(45981049-45981120)
[»] chr4 (40 HSPs)
chr4 (9-132)||(44111769-44111891)
chr4 (9-128)||(42670770-42670888)
chr4 (9-132)||(48361054-48361176)
chr4 (10-132)||(53225669-53225790)
chr4 (7-124)||(21554131-21554246)
chr4 (9-132)||(48195892-48196014)
chr4 (9-123)||(30191907-30192020)
chr4 (7-100)||(25477567-25477660)
chr4 (7-135)||(45828437-45828564)
chr4 (9-128)||(8347651-8347769)
chr4 (9-128)||(32714293-32714411)
chr4 (43-130)||(41116566-41116652)
chr4 (13-109)||(4386160-4386256)
chr4 (11-123)||(42169069-42169180)
chr4 (7-117)||(3162912-3163021)
chr4 (20-130)||(42804260-42804368)
chr4 (9-109)||(50121461-50121561)
chr4 (13-92)||(35429801-35429880)
chr4 (7-98)||(45096609-45096700)
chr4 (9-131)||(43020759-43020879)
chr4 (14-135)||(696379-696499)
chr4 (14-135)||(764677-764797)
chr4 (13-130)||(16412238-16412354)
chr4 (27-100)||(25700486-25700559)
chr4 (20-117)||(43117889-43117985)
chr4 (41-129)||(9894630-9894717)
chr4 (9-65)||(19150791-19150847)
chr4 (13-117)||(36132663-36132766)
chr4 (13-100)||(55951690-55951777)
chr4 (18-92)||(26066410-26066484)
chr4 (9-59)||(50685480-50685530)
chr4 (13-98)||(9044415-9044500)
chr4 (9-130)||(20459265-20459384)
chr4 (7-128)||(20745354-20745473)
chr4 (68-137)||(24100756-24100824)
chr4 (9-130)||(47866040-47866159)
chr4 (13-77)||(17284763-17284827)
chr4 (68-135)||(43141765-43141831)
chr4 (70-137)||(52136696-52136762)
chr4 (68-135)||(54864147-54864213)
[»] chr1 (33 HSPs)
chr1 (9-128)||(519857-519975)
chr1 (12-110)||(38590093-38590191)
chr1 (9-130)||(38040300-38040420)
chr1 (9-123)||(38737955-38738068)
chr1 (9-98)||(44939090-44939179)
chr1 (9-125)||(34146829-34146943)
chr1 (9-100)||(26070857-26070948)
chr1 (9-132)||(26924215-26924337)
chr1 (9-128)||(49944839-49944957)
chr1 (20-130)||(50155333-50155442)
chr1 (9-132)||(26760197-26760319)
chr1 (9-100)||(34332509-34332600)
chr1 (9-91)||(15286033-15286115)
chr1 (9-98)||(6661549-6661638)
chr1 (13-117)||(8971245-8971348)
chr1 (9-117)||(11386171-11386278)
chr1 (13-109)||(15342961-15343057)
chr1 (20-139)||(29256634-29256751)
chr1 (29-102)||(25554570-25554643)
chr1 (9-117)||(640539-640645)
chr1 (9-130)||(43929370-43929489)
chr1 (15-103)||(34146835-34146922)
chr1 (21-60)||(9387259-9387298)
chr1 (71-137)||(2351130-2351195)
chr1 (7-109)||(24305687-24305789)
chr1 (70-132)||(26924298-26924359)
chr1 (70-135)||(26760172-26760236)
chr1 (9-130)||(34662686-34662805)
chr1 (9-130)||(47678280-47678399)
chr1 (9-109)||(6793618-6793718)
chr1 (18-98)||(23923585-23923665)
chr1 (27-98)||(12018457-12018528)
chr1 (7-109)||(27819333-27819436)
[»] chr8 (25 HSPs)
chr8 (9-109)||(16448813-16448913)
chr8 (9-130)||(5031468-5031588)
chr8 (9-128)||(7693057-7693175)
chr8 (13-130)||(10184579-10184695)
chr8 (10-123)||(15720210-15720322)
chr8 (9-110)||(42122990-42123091)
chr8 (9-129)||(8453619-8453737)
chr8 (9-97)||(24618982-24619070)
chr8 (9-132)||(35149692-35149814)
chr8 (7-109)||(8803252-8803354)
chr8 (21-123)||(10839774-10839875)
chr8 (13-97)||(8793755-8793839)
chr8 (8-132)||(1223125-1223248)
chr8 (26-98)||(27789314-27789386)
chr8 (9-109)||(32597522-32597622)
chr8 (13-109)||(40483311-40483407)
chr8 (13-137)||(3236329-3236450)
chr8 (13-92)||(36191775-36191852)
chr8 (9-128)||(12958782-12958899)
chr8 (68-129)||(4156385-4156446)
chr8 (9-130)||(6899424-6899543)
chr8 (70-130)||(8803313-8803372)
chr8 (79-127)||(15726853-15726900)
chr8 (44-116)||(22193619-22193690)
chr8 (27-98)||(13964457-13964528)
[»] chr5 (30 HSPs)
chr5 (9-132)||(38394430-38394552)
chr5 (9-100)||(18473508-18473599)
chr5 (13-97)||(919670-919754)
chr5 (9-129)||(5002164-5002283)
chr5 (9-132)||(11931971-11932094)
chr5 (13-132)||(34297202-34297323)
chr5 (9-98)||(33478142-33478231)
chr5 (9-132)||(13789756-13789878)
chr5 (13-109)||(36434706-36434802)
chr5 (13-132)||(21488311-21488429)
chr5 (9-63)||(13664970-13665024)
chr5 (19-117)||(39239811-39239909)
chr5 (43-110)||(14723409-14723476)
chr5 (15-100)||(36286089-36286174)
chr5 (12-60)||(18391525-18391573)
chr5 (9-132)||(29299359-29299482)
chr5 (9-110)||(19295981-19296083)
chr5 (20-77)||(1248885-1248942)
chr5 (43-128)||(14913164-14913248)
chr5 (13-98)||(22101943-22102028)
chr5 (41-130)||(26327539-26327627)
chr5 (85-138)||(29031136-29031188)
chr5 (68-136)||(20502170-20502237)
chr5 (68-132)||(29002744-29002807)
chr5 (9-65)||(35922107-35922163)
chr5 (68-132)||(38978825-38978888)
chr5 (9-132)||(1015180-1015301)
chr5 (7-117)||(3813992-3814102)
chr5 (9-60)||(14221869-14221920)
chr5 (68-135)||(27488346-27488412)
[»] chr6 (15 HSPs)
chr6 (9-132)||(12999779-12999902)
chr6 (13-103)||(12450381-12450471)
chr6 (9-100)||(27909007-27909099)
chr6 (9-128)||(28630759-28630877)
chr6 (9-91)||(17265745-17265827)
chr6 (9-87)||(30627869-30627947)
chr6 (9-65)||(30895252-30895308)
chr6 (36-132)||(2230400-2230495)
chr6 (9-60)||(3046686-3046737)
chr6 (7-129)||(10283316-10283437)
chr6 (13-63)||(9077656-9077706)
chr6 (43-100)||(3673826-3673883)
chr6 (9-60)||(12605634-12605685)
chr6 (35-90)||(15132083-15132138)
chr6 (13-92)||(15467597-15467676)
[»] scaffold0110 (1 HSPs)
scaffold0110 (8-132)||(1556-1678)
[»] scaffold0238 (1 HSPs)
scaffold0238 (28-98)||(2539-2609)
[»] scaffold0070 (1 HSPs)
scaffold0070 (13-117)||(40162-40266)
[»] scaffold0236 (1 HSPs)
scaffold0236 (11-91)||(16677-16757)
[»] scaffold0136 (1 HSPs)
scaffold0136 (9-109)||(16553-16653)
[»] scaffold0001 (1 HSPs)
scaffold0001 (9-123)||(156792-156905)
[»] scaffold0086 (1 HSPs)
scaffold0086 (11-63)||(1507-1558)
[»] scaffold0778 (1 HSPs)
scaffold0778 (9-66)||(5296-5352)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 8e-63; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 9236207 - 9236050
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    ||||||||||||| ||||||||||||| |||| |||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9236207 atttgacttttttgattcattacataaatgatatatttagtctatattctatatcagatacatcaattactcaatgaatcaaaaaagttaacttttttct 9236108  T
Q  113 tataagtaggatcggagggaataattagttattttaaaaatacacgtcattcattctt 170  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||    
T  9236107 tataagtaggatcggagagaataattagttattttaaaaatacacatcattaattctt 9236050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 21663010 - 21662888
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| |||||||| ||||||| ||||| ||||||||||| |||||| |||||| ||  ||||| | |||||||||||||| ||||||| ||| |||    
T  21663010 aaacatttaacttttttgattcattgcataaatgatgtatttggtctataatctataccaagtacattaattactcaatgaatctaaaaagtcaac-ttt 21662912  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| ||||| ||||||||    
T  21662911 ttcttataaataggaccggaggga 21662888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 54537561 - 54537445
Alignment:
Q  15 ttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttctta 114  Q
    ||||||||||| ||||||| ||||| |  |||||||||||||||||||| |  |||||||||| ||||||||||||||  |||||| ||  |||||||||    
T  54537561 ttgacttttttgattcattgcataaattgtgtatttgatctatattctagactagatacatcaattactcaatgaatcttaaaagtcaa-atttttctta 54537463  T
Q  115 taagtaggatcggaggga 132  Q
    ||| |||||||| |||||    
T  54537462 taaataggatcgaaggga 54537445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 52865069 - 52864975
Alignment:
Q  15 ttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttt 109  Q
    ||||||||||| ||||||| ||||| |||| |||||  |||||||| || || |||||||||| |||||||||||||| |||||||||| |||||    
T  52865069 ttgacttttttgattcattgcataaatgatatatttagtctatattttagataagatacatcaattactcaatgaatctaaaaagttaaattttt 52864975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 23222982 - 23223071
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    ||||||||||||||||| ||| |||| |||| ||||||||||| |||||||| || |  |||||||||| |||||||||||||| |||||    
T  23222982 aaacatttgacttttttaatttattatataaatgatgtatttggtctatattttagacaagatacatcagttactcaatgaatctaaaaa 23223071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 51723498 - 51723386
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    |||| |||||||| |||||||  |||| |||| |||||  |||||||||||||||| |||||| | |||||||||||||| ||||| | ||| |||||||    
T  51723498 atttaacttttttgattcattgtataaatgatatatttagtctatattctatatcaaatacattaattactcaatgaatctaaaaaatcaac-tttttct 51723400  T
Q  113 tataagtaggatcg 126  Q
    ||||| ||||||||    
T  51723399 tataaataggatcg 51723386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 51517081 - 51516960
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||||||||||||  |||||| ||||| ||||||||||| ||||||||||||  ||  ||||| | |||||| || |||| ||||||| ||| |||    
T  51517081 aaacatttgacttttttggttcattgcataaatgatgtatttggtctatattctatgccaagtacattaattactccat-aatctaaaaagtcaac-ttt 51516984  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| ||||| ||||||||    
T  51516983 ttcttataaataggaccggaggga 51516960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 53441931 - 53442053
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| |||||||| ||||||| ||||| ||||||||||| | || |||||||| ||  ||||| | ||| |||||||||  ||||||| ||| |||    
T  53441931 aaacattttacttttttgattcattgcataaatgatgtatttggtatacattctataccaagtacattaattattcaatgaatttaaaaagtcaac-ttt 53442029  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| ||||| ||||||||    
T  53442030 ttcttataaataggaccggaggga 53442053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 25954051 - 25954128
Alignment:
Q  14 tttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaat 91  Q
    |||||||||||| |||||||| |||| |||| |||||||||||||||||| |  |||||||| | |||||||||||||    
T  25954051 tttgacttttttaattcattatataaatgatatatttgatctatattctagacaagatacattaattactcaatgaat 25954128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 12747721 - 12747840
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||||| |||||| ||||||| ||||| |  |||||||| | ||||||||| | || |||||||| |||||| ||||||| ||||| | || ||||    
T  12747721 aaacatttgatttttttgattcattgcataaattgtgtatttggtgtatattctagaccaaatacatcaattactcgatgaatctaaaaaatcaa-tttt 12747819  T
Q  109 ttcttataagtaggatcggag 129  Q
    ||||||||| ||||| |||||    
T  12747820 ttcttataaataggaccggag 12747840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 19649603 - 19649692
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    ||||||||||||||||| |||||||  |||| ||||||||||  |||||||| || | |  |||||||| |||||||||||||| |||||    
T  19649603 aaacatttgacttttttgattcattgaataattgatgtatttagtctatattttagaccgaatacatcaattactcaatgaatctaaaaa 19649692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 20028493 - 20028549
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctat 64  Q
    ||||| ||||||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  20028493 aaaaatatttgactttttt-attcatttcataaatgatgtatttgatctatattctat 20028549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 12064933 - 12065040
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| |||||||| ||||||| ||| | ||||||||||| |||||||||||||  | ||| || | ||||| |||||||  ||||||| || ||||    
T  12064933 aaacattttacttttttgattcattgcattaatgatgtatttggtctatattctatactaaatatattaattacttaatgaatttaaaaagtcaa-tttt 12065031  T
Q  109 ttcttataa 117  Q
    |||||||||    
T  12065032 ttcttataa 12065040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 44518155 - 44518044
Alignment:
Q  14 tttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttctt 113  Q
    |||||||||||| |||||||   ||| ||||||||||| |||||||| || |  |||||||| | |||||||||||||| ||||||| ||   |||||||    
T  44518155 tttgacttttttgattcattgtctaaatgatgtatttggtctatattttagacaagatacattaattactcaatgaatctaaaaagtcaa-agttttctt 44518057  T
Q  114 ataagtaggatcg 126  Q
    |||| ||||||||    
T  44518056 ataaataggatcg 44518044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 2544583 - 2544489
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatc-agatacatcatttactcaatgaatcaaaaaagtta 102  Q
    ||||| ||||||||||  |||||||  |||||||||||||||| |||||| | |||| | |||||||||| ||| |||||||| | |||||||||    
T  2544583 aaacaattgactttttagattcattgtataagtgatgtatttggtctataatttataacaagatacatcaattattcaatgaacctaaaaagtta 2544489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 45010778 - 45010893
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    ||||||||||||| ||| |||  |||| |||||| | || ||||||||||| |  |||||||||| ||| ||||| |||| ||||| |||| |||| |||    
T  45010778 atttgacttttttgatttattgtataaatgatgtttgtggtctatattctaaactagatacatcaattattcaataaatctaaaaaattaa-ttttctct 45010876  T
Q  113 tataagtaggatcggag 129  Q
    ||||| ||||| |||||    
T  45010877 tataaataggaccggag 45010893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 8266355 - 8266263
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaa 103  Q
    ||||||||||||||||| |||||||  |||| | |||| |||| |  ||||| || || | |||||||| |||||||||||||| ||||||||||    
T  8266355 aaacatttgacttttttgattcattgtataaataatgtgtttggt--atattttagataaaatacatcaattactcaatgaatctaaaaagttaa 8266263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 9197109 - 9197159
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattcta 63  Q
    ||||||||||||| ||||||| ||||| ||||||||||  |||||||||||    
T  9197109 atttgacttttttgattcattgcataaatgatgtattttgtctatattcta 9197159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 36985275 - 36985158
Alignment:
Q  14 tttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttctt 113  Q
    |||||||||||| ||||||| ||||| | ||||||||  ||||||||||| |  |||||||| | |||  |||| ||||  |||| |||||  |||||||    
T  36985275 tttgacttttttgattcattgcataaataatgtatttagtctatattctaaacaagatacattaattatacaataaatcttaaaaattaac-attttctt 36985177  T
Q  114 ataagtaggatcggaggga 132  Q
    |||| ||||| ||||||||    
T  36985176 ataaataggaccggaggga 36985158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 37010714 - 37010597
Alignment:
Q  14 tttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttctt 113  Q
    |||||||||||| ||||||| ||||| | ||||||||  ||||||||||| |  |||||||| | |||  |||| ||||  |||| |||||  |||||||    
T  37010714 tttgacttttttgattcattgcataaataatgtatttagtctatattctaaacaagatacattaattatacaataaatcttaaaaattaac-attttctt 37010616  T
Q  114 ataagtaggatcggaggga 132  Q
    |||| ||||| ||||||||    
T  37010615 ataaataggaccggaggga 37010597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 49885475 - 49885383
Alignment:
Q  36 ataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagg 130  Q
    |||| ||||||||||| ||||| ||||| |  |||||||||| ||| | |||||||| ||||| |||| ||||||||||||| ||| ||||||||    
T  49885475 ataattgatgtatttggtctat-ttctagactagatacatcaattattgaatgaatctaaaaaattaa-ttttttcttataaatagaatcggagg 49885383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 5177822 - 5177909
Alignment:
Q  41 tgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagg 130  Q
    ||||||||||| ||||| |||||  | || ||||||| ||| | |||||||| |||||||||| ||||||||||||| ||||| ||||||    
T  5177822 tgatgtatttggtctat-ttctaagttaggtacatcaattattgaatgaatctaaaaagttaa-ttttttcttataaataggaccggagg 5177909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 25910215 - 25910323
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||  ||||| ||||| | |||||   ||||||||| ||||||||||| | || |||||| | ||||||||| |||  ||||||| ||| |||    
T  25910215 aaacatttgagattttttattcactgcataaagaatgtatttggtctatattctacaccaaatacattaattactcaataaatttaaaaagtcaac-ttt 25910313  T
Q  109 ttcttataag 118  Q
    ||||||||||    
T  25910314 ttcttataag 25910323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 47720792 - 47720727
Alignment:
Q  10 aacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacat 75  Q
    ||||||||| |||||  ||||||||||||| |||| |||||| | ||||||||||| || ||||||    
T  47720792 aacatttgattttttcgattcattacataaatgatatatttggtttatattctataccaaatacat 47720727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 29290890 - 29290795
Alignment:
Q  21 tttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttataa 117  Q
    ||||| |||||||  |||| | ||||||||  |||||| | || ||||||||||||| ||  |||||||||| ||||||| || |||||||||||||    
T  29290890 tttttaattcattgaataacttatgtatttagtctataatatagatcagatacatcagttgttcaatgaatctaaaaagtgaa-ttttttcttataa 29290795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 32711253 - 32711317
Alignment:
Q  36 ataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagt 100  Q
    |||| |||||||||||  ||||||| || | ||||||||||| ||| |||||||||| |||||||    
T  32711253 ataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatctaaaaagt 32711317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 43449078 - 43448967
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    |||||| ||||||  ||||||  |||| ||||||||||| | |||||  || |  ||||| |||| |||||||||||||| ||||| | ||| |||||||    
T  43449078 atttgatttttttggttcattgtataaatgatgtatttggtttatatcatagacaagatatatcaattactcaatgaatctaaaaaatcaac-tttttct 43448980  T
Q  113 tataagtaggatc 125  Q
    ||||| |||||||    
T  43448979 tataaataggatc 43448967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 53703813 - 53703877
Alignment:
Q  68 agatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggaggga 132  Q
    |||||||||| |||| ||||||| | |||| || ||||||||||||||||  |||| ||||||||    
T  53703813 agatacatcacttacacaatgaacctaaaaggtcaacttttttcttataataaggaccggaggga 53703877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 13622511 - 13622562
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatatt 60  Q
    |||||||||||||||||  |||||| ||||| |||| |||||| ||||||||    
T  13622511 aaacatttgacttttttagttcattgcataaatgatatatttggtctatatt 13622562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 21662971 - 21663037
Alignment:
Q  70 atacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagggaataat 137  Q
    ||||||||||||  ||||||||||||||||||||  | |||||||||| || || |||||||| ||||    
T  21662971 atacatcatttatgcaatgaatcaaaaaagttaa-atgtttcttataaataagaccggagggagtaat 21663037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 43901667 - 43901725
Alignment:
Q  71 tacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagg 130  Q
    |||||||||||| ||||||| |||||||||||| || ||||||||||  |||| ||||||    
T  43901667 tacatcatttacacaatgaaccaaaaaagttaa-ttgtttcttataataaggaccggagg 43901725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 2e-38; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 11030216 - 11030323
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  11030216 aaacatttgacttttttgattcattacataaatgatgtatttggtctatattctatatcagatacatcaattactcaatgaatctaaaaagttaa-tttt 11030314  T
Q  109 ttcttataa 117  Q
    |||||||||    
T  11030315 ttcttataa 11030323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 41153135 - 41153257
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||| |||||||| || | || |||||||| |||||||||||||| ||||||| ||| |||    
T  41153135 aaacatttgacttttttgattcattgcataaatgatgtatttggtctatattataaaccaaatacatcaattactcaatgaatctaaaaagtcaac-ttt 41153233  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| ||||||||||||||    
T  41153234 ttcttataaataggatcggaggga 41153257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 11182190 - 11182297
Alignment:
Q  10 aacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttt 109  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||  ||||||||||||| |||||||| ||||||||| |||  |||||||||| |||||    
T  11182190 aacatttgacttttttgattcattccataaatgatgtatttgattcatattctatatcatatacatcaattactcaataaatttaaaaagttaatttttt 11182289  T
Q  110 tcttataa 117  Q
    | ||||||    
T  11182290 ttttataa 11182297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 38554482 - 38554601
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||||||| |||| ||||||||||||| | ||||||||| ||||||||||||| ||  ||||| | |||||||||||||  ||||||||||| |||    
T  38554482 aaacatttgactattttgattcattacataaataatgtatttggtctatattctataccaagtacattaattactcaatgaatttaaaaagttaac-ttt 38554580  T
Q  109 ttcttataagtaggatcggag 129  Q
    ||||||||| ||||| |||||    
T  38554581 ttcttataaataggaccggag 38554601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 7943467 - 7943586
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    ||||||||||||| ||||||| ||||| |||| |||||| |||||||| || |  |||||||||| ||| |||||||||| ||||||| || ||||||||    
T  7943467 atttgactttttttattcattgcataaatgatatatttggtctatattgtagacaagatacatcaattattcaatgaatctaaaaagtcaatttttttct 7943566  T
Q  113 tataagtaggatcggaggga 132  Q
    ||||| ||||| ||||||||    
T  7943567 tataaataggaccggaggga 7943586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 12873849 - 12873725
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactt 106  Q
    ||||| |||||||||| || ||||||| ||||| ||||||||||  ||||||||||||| || |||||| | ||||| |||||||| ||||||| ||| |    
T  12873849 aaaaatatttgactttattgattcattgcataaatgatgtatttagtctatattctataccaaatacattaattacttaatgaatctaaaaagtcaac-t 12873751  T
Q  107 ttttcttataagtaggatcggaggga 132  Q
    |||||||||||  |||||||||||||    
T  12873750 ttttcttataaaaaggatcggaggga 12873725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 12962829 - 12962729
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||| |||||||| |||| ||  ||||| | |||||||||||||| ||||||| |||||||    
T  12962829 aaacatttgacttttttgattcattgcataaatgatgtatttggtctatattttataccaagtacattaattactcaatgaatctaaaaagtcaactttt 12962730  T
Q  109 t 109  Q
    |    
T  12962729 t 12962729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 4410801 - 4410915
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| || ||||| ||| ||| ||||| |||||||||||||||||||| || |  |||||||| | |||| ||||||||| ||||||| |||||||    
T  4410801 aaacatttaacctttttgatttattgcataaatgatgtatttgatctatattttaaacaagatacattaattacacaatgaatctaaaaagtcaactttt 4410900  T
Q  109 ttcttataagtagga 123  Q
    ||||||||| |||||    
T  4410901 ttcttataaatagga 4410915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 20555381 - 20555263
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| |||||||| ||||||||||||| | ||||||||| ||||||||||| |  |||||||||| ||| |||||| ||| ||||| |||| ||||    
T  20555381 aaacatttaactttttt-attcattacataaataatgtatttggtctatattctagacaagatacatcaattattcaatgtatctaaaaaattaa-tttt 20555284  T
Q  109 ttcttataagtaggatcggag 129  Q
    ||||||||| ||||| |||||    
T  20555283 ttcttataaataggaccggag 20555263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 38983021 - 38983136
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactt 106  Q
    ||||| ||||||||||||| ||||||| ||||| ||||||||||  ||||||||||| |  |||||||||| |||| ||||||||| ||||| | |||||    
T  38983021 aaaaatatttgacttttttgattcattgcataaatgatgtattttgtctatattctagacaagatacatcaattacacaatgaatctaaaaaatcaactt 38983120  T
Q  107 ttttcttataagtagga 123  Q
    |||| |||||| |||||    
T  38983121 tttt-ttataaatagga 38983136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 9152403 - 9152494
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagt 100  Q
    ||||||||||||||||| | |||||| |||| ||||||||||| |||||||| || |  |||||||||| |||||||||||||| |||||||    
T  9152403 aaacatttgacttttttgagtcattaaataattgatgtatttggtctatattttagactagatacatcaattactcaatgaatctaaaaagt 9152494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 32457241 - 32457337
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttt 109  Q
    ||||||||||||| ||||||| ||||| ||||||||||  ||||||||||| |  |||||||||| ||||| |||||||| ||||||| || |||||    
T  32457241 atttgacttttttgattcattgcataaatgatgtatttagtctatattctagacaagatacatcaattacttaatgaatctaaaaagtcaaattttt 32457337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 22333549 - 22333671
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||  |||||||| ||||||| ||||| | |||||||||||||||||| |||||||  || || | |||||||||||||| ||||||| || ||||    
T  22333549 aaacattaaacttttttgattcattgcataaataatgtatttgatctatattatatatcaagtatattaattactcaatgaatctaaaaagtcaa-tttt 22333647  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    |||| |||| ||||| | ||||||    
T  22333648 ttctaataactaggaccagaggga 22333671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 29989016 - 29988962
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattcta 63  Q
    ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||    
T  29989016 aaacatttgacttttttgattcattgcataaatgatgtatttgatctatattcta 29988962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 5281200 - 5281319
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactt 106  Q
    ||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||| |||| || |||||| | ||||  ||| |||  ||||||| ||| |    
T  5281200 aaaaatatttgacttttttgattcattgcataaatgatgtatttgatctatattttataccaaatacattaattacaaaat-aatataaaaagtcaac-t 5281297  T
Q  107 ttttcttataagtaggatcgga 128  Q
    ||||||||||| || |||||||    
T  5281298 ttttcttataaatatgatcgga 5281319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 5109483 - 5109368
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    ||||||||||||| |||||    |||| | ||||||||   |||||||||||| || |||||| | |||||||||||||| |||||||||||| ||||||    
T  5109483 atttgacttttttgattcaaagtataaattatgtatttagcctatattctataccaaatacattaattactcaatgaatctaaaaagttaact-ttttct 5109385  T
Q  113 tataagtaggatcggag 129  Q
    ||||| ||||| |||||    
T  5109384 tataaataggaccggag 5109368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 28248961 - 28249057
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttt 109  Q
    ||||||||||||| ||| ||| ||||| | ||||||||  ||||||||||||| || |||||| | ||| | |||||||| ||||||| ||||||||    
T  28248961 atttgacttttttgattaattgcataaataatgtatttagtctatattctataccaaatacattaattatttaatgaatctaaaaagtcaacttttt 28249057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 30758748 - 30758856
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    ||||||||||||| ||||||| ||||| || |||||||| |||||| | || |  |||||||||| ||||||||| |||| ||||||| ||  |||||||    
T  30758748 atttgactttttttattcattgcataaatggtgtatttggtctatactttagacaagatacatcaattactcaat-aatctaaaaagtcaa-atttttct 30758845  T
Q  113 tataagtagga 123  Q
    ||||| |||||    
T  30758846 tataaatagga 30758856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 39445113 - 39445019
Alignment:
Q  15 ttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttt 109  Q
    ||||||||||| ||| ||| ||||| || ||||||| |||||||||||| |  | |||||||| ||||||||||||||  |||||| || |||||    
T  39445113 ttgacttttttaatttattgcataaatggtgtatttaatctatattctagacaaaatacatcaattactcaatgaatcttaaaagtcaaattttt 39445019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45034521 - 45034402
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||  | || ||||||| ||| | |||||||| |||||||||||| ||    
T  45034521 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggttaggtacatcaattattgaatgaatctaaaaagttaact-tt 45034424  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  45034423 ttcttataaataggaccggagg 45034402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 35728499 - 35728571
Alignment:
Q  19 cttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaat 91  Q
    ||||||| ||||||| ||||| |||| |||||| ||||||||||| |  |||||||||| ||| |||||||||    
T  35728499 cttttttgattcattgcataaatgatatatttggtctatattctaaacaagatacatcaattattcaatgaat 35728571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 36881651 - 36881535
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||||||||| | ||| ||||| |||||||      | |||||||| | |||||||||| ||| ||||||| ||  |||    
T  36881651 aaacatttgacttttttgattcattacataaataatgaatttggtctatat------taagatacattaattactcaatgtatctaaaaagtcaa-attt 36881559  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| ||| | ||||||||    
T  36881558 ttcttataaatagaaccggaggga 36881535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 42698147 - 42698210
Alignment:
Q  68 agatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggaggga 132  Q
    |||||||||| |||||||||||||| ||||||| || |||||| |||||| || |||||||||||    
T  42698147 agatacatcaattactcaatgaatctaaaaagtcaaatttttt-ttataaatatgatcggaggga 42698210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 2936417 - 2936334
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatc 92  Q
    ||||||||||||||||| |||||||  |||  |||| |||||  ||||||||||||| ||  ||||| | ||||||||||||||    
T  2936417 aaacatttgacttttttgattcattggatagatgatatatttagtctatattctataccaagtacattaattactcaatgaatc 2936334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 7833372 - 7833317
Alignment:
Q  43 atgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    |||||| ||||||||||| || ||||||||||||| ||| |||||||||| |||||    
T  7833372 atgtatctgatctatattttaaatcagatacatcaattattcaatgaatctaaaaa 7833317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 10205046 - 10204959
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagt 100  Q
    |||||||| |||| |||||||  |||| ||||||||||  |||||||| || |  |||||||||| || ||||||||||| |||||||    
T  10205046 atttgactcttttgattcattgtataaatgatgtatttagtctatattttagacaagatacatcaattgctcaatgaatctaaaaagt 10204959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 11794573 - 11794452
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| || |||||  |||||  ||||| |||||||||||||||| |||||||| ||  ||||| | ||| ||||| |||| ||||| | || ||||    
T  11794573 aaacattttacatttttgtttcatggcataaatgatgtatttgatctacattctataccaagtacattaattattcaataaatctaaaaaatcaa-tttt 11794475  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| |||| |||||||||    
T  11794474 ttcttataaatagg-tcggaggga 11794452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 39118132 - 39118049
Alignment:
Q  15 ttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    ||||||||||| ||| |||  |||| | ||||||||| ||||||||||| || ||||| |||| |||||||||| ||| |||||    
T  39118132 ttgacttttttgatttattgtataaattatgtatttggtctatattctagataagatatatcaattactcaatggatctaaaaa 39118049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 28494828 - 28494774
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattcta 63  Q
    |||||||||| |||||| ||||||| ||||| |||| |||||| |||||||||||    
T  28494828 aaacatttgatttttttgattcattgcataaatgatatatttggtctatattcta 28494774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 28014397 - 28014348
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctata 58  Q
    ||||||||||| ||||| ||||||| ||||| ||||||||||| ||||||    
T  28014397 aaacatttgaccttttttattcattgcataaatgatgtatttggtctata 28014348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 30761502 - 30761382
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||| || ||   ||||||||  ||||||||||| |  ||||| || | |||||||||||||  ||||||| ||  | |    
T  30761502 aaacatttgacttttttgattcattgcacaaaatatgtatttagtctatattctagacaagataaattaattactcaatgaatgtaaaaagtcaa-atgt 30761404  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  30761403 ttcttataaataggaccggagg 30761382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45571153 - 45571034
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||| ||||    
T  45571153 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa-tttt 45571056  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  45571055 ttcttataaataggaccggagg 45571034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45574820 - 45574701
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||| ||||    
T  45574820 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa-tttt 45574723  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  45574722 ttcttataaataggaccggagg 45574701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45578487 - 45578368
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||| ||||    
T  45578487 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa-tttt 45578390  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  45578389 ttcttataaataggaccggagg 45578368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45582154 - 45582035
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||| ||||    
T  45582154 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa-tttt 45582057  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  45582056 ttcttataaataggaccggagg 45582035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45585821 - 45585702
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||| ||||    
T  45585821 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa-tttt 45585724  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  45585723 ttcttataaataggaccggagg 45585702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45589488 - 45589369
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||| ||||    
T  45589488 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa-tttt 45589391  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  45589390 ttcttataaataggaccggagg 45589369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45593155 - 45593036
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||| ||||    
T  45593155 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa-tttt 45593058  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  45593057 ttcttataaataggaccggagg 45593036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45596822 - 45596703
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||| ||||    
T  45596822 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa-tttt 45596725  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  45596724 ttcttataaataggaccggagg 45596703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45600489 - 45600370
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||| ||||    
T  45600489 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa-tttt 45600392  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  45600391 ttcttataaataggaccggagg 45600370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45604156 - 45604037
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||| ||||    
T  45604156 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa-tttt 45604059  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  45604058 ttcttataaataggaccggagg 45604037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45607823 - 45607704
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||| ||||    
T  45607823 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa-tttt 45607726  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  45607725 ttcttataaataggaccggagg 45607704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45611490 - 45611371
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||| ||||    
T  45611490 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa-tttt 45611393  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  45611392 ttcttataaataggaccggagg 45611371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45615157 - 45615038
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||| ||||    
T  45615157 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaa-tttt 45615060  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  45615059 ttcttataaataggaccggagg 45615038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 34447531 - 34447649
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    |||||||||||||  |||||| ||||| | ||||||||| | |||||| || |  ||||||||   |||| ||||||||| ||||| | ||| |||||||    
T  34447531 atttgacttttttagttcattgcataaataatgtatttggtttatattttagacaagatacattgattacacaatgaatctaaaaaatcaac-tttttct 34447629  T
Q  113 tataagtaggatcggaggga 132  Q
    ||||| ||||| | ||||||    
T  34447630 tataaataggaccagaggga 34447649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 2e-32; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 28677341 - 28677470
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||| |  |||||||||| ||||||||| |||| ||||||| || ||||    
T  28677341 aaacatttgacttttttgattcattgcataaatgatgtatttggtctatattctagacaagatacatcaattactcaataaatctaaaaagtcaa-tttt 28677439  T
Q  109 ttcttataagtaggatcggagggaataatta 139  Q
    ||||||||| |||||||||||||| ||||||    
T  28677440 ttcttataaataggatcggagggagtaatta 28677470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 36245400 - 36245522
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||| |  |||||||||| |||||||||||||| ||||||| || ||||    
T  36245400 aaacatttgacttttttgattcattgcataaatgatgtatttggtctatattctagacaagatacatcaattactcaatgaatctaaaaagtcaa-tttt 36245498  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| |||||  |||||||    
T  36245499 ttcttataaataggacaggaggga 36245522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 29365645 - 29365751
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| || |||| ||||| ||||||||||||||||||||||||| || |||||| | |||||||||||||| ||||||| || ||||    
T  29365645 aaacatttgacttttttaatacattgcataaatgatgtatttgatctatattctataccaaatacattaattactcaatgaatctaaaaagtcaa-tttt 29365743  T
Q  109 ttcttata 116  Q
    ||||||||    
T  29365744 ttcttata 29365751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 6838499 - 6838411
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaa 97  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||| |  |||||||| | |||||||||||||||||||    
T  6838499 aaacatttgacttttttgattcattgcataaatgatgtatttggtctatattctagacaagatacattaattactcaatgaatcaaaaa 6838411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 2523794 - 2523916
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||| |||||  ||||||| || ||||||||||||  ||  ||||| | |||||||||||||| ||||||| ||| |||    
T  2523794 aaacatttgacttttttgattcattgcataaacgatgtatctggtctatattctatgccaagtacattaattactcaatgaatctaaaaagtcaac-ttt 2523892  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| ||||| ||||||||    
T  2523893 ttcttataaataggaccggaggga 2523916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 8566105 - 8566218
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| |||||||| ||||||| ||||| ||||||||||| ||||||||||| |  |||||||||| |||||||||||||| ||||| | ||  |||    
T  8566105 aaacatttaacttttttgattcattgcataaatgatgtatttggtctatattctagacaagatacatcaattactcaatgaatctaaaaaatcaa-attt 8566203  T
Q  109 ttcttataagtagga 123  Q
    ||||||||| |||||    
T  8566204 ttcttataaatagga 8566218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 11668039 - 11668152
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||| ||||| |||| |||||||||||||||||| |  |||||||||| ||| |||||||||  ||||||| ||  |||    
T  11668039 aaacatttgacttttttgattcattgcataaatgatatatttgatctatattctagacaagatacatcaattaatcaatgaatgtaaaaagtcaa-attt 11668137  T
Q  109 ttcttataagtagga 123  Q
    ||||||||| |||||    
T  11668138 ttcttataaatagga 11668152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 13807362 - 13807244
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||||||||| |||| |||||||||||||||||| |  ||    |||| |||||||||||||| ||||||| ||| |||    
T  13807362 aaacatttgacttttttgattcattacataaatgatatatttgatctatattctaaagaag----atcaattactcaatgaatctaaaaagtcaac-ttt 13807268  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| || || ||||||||    
T  13807267 ttcttataaataagaccggaggga 13807244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 41850720 - 41850620
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| |||||||| ||||||| ||||| ||||||||||| |||||||| |||| || |||||| | ||| |||||||||| ||||| |||||||||    
T  41850720 aaacattttacttttttgattcattgcataaatgatgtatttgctctatattttataccaaatacattaattattcaatgaatctaaaaaattaactttt 41850621  T
Q  109 t 109  Q
    |    
T  41850620 t 41850620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 39153311 - 39153412
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||  |||||||| || | || |||||||| |||||||||||| | ||||||| || ||||    
T  39153311 aaacatttgacttttttgattcattgcataaatgatgtatttagtctatattatagaccaaatacatcaattactcaatgaagctaaaaagtcaattttt 39153410  T
Q  109 tt 110  Q
    ||    
T  39153411 tt 39153412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 48838436 - 48838347
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    |||||||| |||||||| ||||||||||||| ||||||||||| |||||||| |||| || |||||| | || ||||||||||| |||||    
T  48838436 aaacatttaacttttttaattcattacataaatgatgtatttggtctatattttataccaaatacattaattgctcaatgaatctaaaaa 48838347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 32811738 - 32811840
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    ||||||||||||| ||| ||| ||||| ||||||||||| || |||||||||| || ||| |||| |||||||||||||| ||||| |||| ||||||||    
T  32811738 atttgactttttt-attaattccataaatgatgtatttggtccatattctataccatataaatcaattactcaatgaatctaaaaaattaa-ttttttct 32811835  T
Q  113 tataa 117  Q
    |||||    
T  32811836 tataa 32811840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 10007598 - 10007727
Alignment:
Q  9 aaacatttgacttttttc--attcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactt 106  Q
    |||||||||||||||||   ||||||| ||||| | ||||||||| ||||||||||| |  |||||||| | |||  ||||||||| ||||||| ||| |    
T  10007598 aaacatttgactttttttttattcatttcataaattatgtatttggtctatattctacacaagatacattaattatacaatgaatctaaaaagtcaac-t 10007696  T
Q  107 ttttcttataagtaggatcggagggaataat 137  Q
    ||||||||||| ||||| |||||||| ||||    
T  10007697 ttttcttataaataggaccggagggagtaat 10007727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 24163393 - 24163270
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| |||||||| ||||||| ||||| |||||||| || |||||||||||    |||||||| | |||  ||||||||| ||||||| || ||||    
T  24163393 aaacatttcacttttttaattcattgcataaatgatgtatatggtctatattctacgcaagatacattaattatacaatgaatctaaaaagtaaattttt 24163294  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||| ||||| ||||| ||||||||    
T  24163293 ttcctataaataggaccggaggga 24163270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 45533354 - 45533244
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| |||||||  |||| | ||||||||| ||||||||||| |  |||||||| | ||||  |||||||| ||||||| || ||||    
T  45533354 aaacatttgacttttttaattcattgtataaataatgtatttggtctatattctagacaagatacattaattacataatgaatctaaaaagtcaa-tttt 45533256  T
Q  109 ttcttataagta 120  Q
    ||||||||||||    
T  45533255 ttcttataagta 45533244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 10462495 - 10462379
Alignment:
Q  15 ttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttctta 114  Q
    ||||| ||||| ||||||| ||||| ||||||||||| | |||||| || |  |||||||||| | |||||||||||| |||||| | || |||||||||    
T  10462495 ttgacattttttattcattgcataaatgatgtatttggtatatattttagacaagatacatcaatcactcaatgaatctaaaaag-tcacatttttctta 10462397  T
Q  115 taagtaggatcggaggga 132  Q
    ||| || |||||||||||    
T  10462396 taaataagatcggaggga 10462379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 48082918 - 48082823
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttt 109  Q
    ||||||||||||| ||||||||||||| || |||||||| ||||||||||| |   ||||||| | |||| ||||||||| ||||||| ||||||||    
T  48082918 atttgactttttttattcattacataaatggtgtatttg-tctatattctacacatgatacattaattacacaatgaatctaaaaagtcaacttttt 48082823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 30869210 - 30869301
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagt 100  Q
    ||||||||||| ||||| ||| |||  |||| | ||||||||| ||||||||||| |  |||||||||| |||||||||||||| |||||||    
T  30869210 aaacatttgacgtttttgatttattgtataaataatgtatttggtctatattctagacaagatacatcaattactcaatgaatctaaaaagt 30869301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 40142795 - 40142925
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactt 106  Q
    ||||||||||||||||||| ||||||| ||||| | ||||||||| ||||||| ||| |  |||||||| | |||  |||| |||| ||||| | || ||    
T  40142795 aaaaacatttgacttttttgattcattgcataaataatgtatttggtctatatcctaaacaagatacattaattatacaataaatctaaaaaatcaa-tt 40142893  T
Q  107 ttttcttataagtaggatcggagggaataatt 138  Q
    ||||||||||  ||||| |||||||| |||||    
T  40142894 ttttcttatacataggaccggagggagtaatt 40142925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 2680886 - 2680936
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattcta 63  Q
    ||||||||||||| |||||||| |||| |||||||||||||||||||||||    
T  2680886 atttgacttttttgattcattatataaatgatgtatttgatctatattcta 2680936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 32811402 - 32811530
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||| ||||||||||| ||||| |||||    || ||||||| ||||| |||||||| ||||| |||||||||    
T  32811402 aaacaatttacttttttgattcattgaataattgatgtatttggtctat-ttctaggctaggtacatcaattactgaatgaatctaaaaaattaactttt 32811500  T
Q  109 ttcttataagtaggatcggagggaataatta 139  Q
     |||||||| ||||| |||||||| ||||||    
T  32811501 -tcttataaataggaccggagggagtaatta 32811530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 30823835 - 30823742
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagt 100  Q
    ||||| ||||||  ||||| |||||||| |||| | ||||||||| ||||||||||||| || |||||| | || ||||||||||| |||||||    
T  30823835 aaaaatatttgatattttttattcattatataaataatgtatttggtctatattctataccaaatacattaatttctcaatgaatctaaaaagt 30823742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 45441464 - 45441561
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttttt 110  Q
    ||||||||||||| ||| |||  |||  ||||||||||||||||||||||| |  ||||||| || ||| ||| |||||| |||||||||| ||||||    
T  45441464 atttgacttttttgatttattgtatagatgatgtatttgatctatattctagacaagatacaccaattattcattgaatctaaaaagttaattttttt 45441561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 2399976 - 2400067
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagt 100  Q
    ||||||||||||||||| |||||||  |||| |||||||||| ||||||||| || |  |||||||||| ||| |||| ||| | |||||||    
T  2399976 aaacatttgacttttttgattcattgtataaatgatgtatttaatctatattttagactagatacatcaattattcaacgaacctaaaaagt 2400067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 2610300 - 2610229
Alignment:
Q  20 ttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaat 91  Q
    |||||| ||||||| ||||| ||||||||||  ||||||||||| | || |||||||| |||||||||||||    
T  2610300 ttttttaattcattgcataaatgatgtatttagtctatattctagaccaaatacatcaattactcaatgaat 2610229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 40176058 - 40176161
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactt 106  Q
    |||||||||| |||||||| ||||||| | ||| ||||||||||| ||||||||||| | ||  ||||| | || || |||||||| ||||||| || ||    
T  40176058 aaaaacatttcactttttttattcattgcttaaatgatgtatttggtctatattctaaaccaagtacattaatttcttaatgaatctaaaaagtcaattt 40176157  T
Q  107 tttt 110  Q
    ||||    
T  40176158 tttt 40176161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 34117981 - 34118063
Alignment:
Q  27 attcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttt 109  Q
    ||||||| ||||| ||||||||||| ||||||||||| |  |||||||| | |||| ||||||||  ||||||| ||||||||    
T  34117981 attcattgcataaatgatgtatttggtctatattctagacaagatacattaattacacaatgaatttaaaaagtcaacttttt 34118063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 43174363 - 43174425
Alignment:
Q  70 atacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggaggga 132  Q
    |||||||||||||  ||||||| |||||||| || |||||| |||||| ||||||||||||||    
T  43174363 atacatcatttacgaaatgaattaaaaaagtaaattttttttttataaataggatcggaggga 43174425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 28298980 - 28298924
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattcta 63  Q
    ||||||||||||||||||| ||||||| ||||| |  | ||||||||||||||||||    
T  28298980 aaaaacatttgacttttttgattcattgcataaatagtatatttgatctatattcta 28298924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 32811441 - 32811380
Alignment:
Q  70 atacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggaggga 132  Q
    |||||||| ||| ||||||||||||||||| ||| || |||||||||  ||||||||||||||    
T  32811441 atacatcaattattcaatgaatcaaaaaag-taaattgtttcttatatataggatcggaggga 32811380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 27231858 - 27231977
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| ||||||||||| |||    
T  27231858 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaac-ttt 27231955  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  27231956 ttcttataaataggaccggagg 27231977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 44682679 - 44682571
Alignment:
Q  20 ttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagt 119  Q
    |||||| ||||||| ||||| |||| |||||| |||||| |||| |  | |||||||| ||||| ||||||||  |||||| || ||||| ||||||| |    
T  44682679 ttttttgattcattgcataaatgatatatttggtctataatctagacaaaatacatcagttacttaatgaatctcaaaagtcaaattttt-cttataaat 44682581  T
Q  120 aggatcggag 129  Q
    |||| |||||    
T  44682580 aggaccggag 44682571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 9979829 - 9979951
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    |||||||| |||| ||| ||| ||||| ||||||||||  || |||||||| |  |||||||| | ||||||||| |||| ||||||| || |||| |||    
T  9979829 atttgactattttgatttatt-cataaatgatgtatttagtcaatattctagacaagatacatgaattactcaataaatctaaaaagtcaaatttt-tct 9979926  T
Q  113 tataagtaggatcggagggaataat 137  Q
    ||||| || | ||||||||| ||||    
T  9979927 tataaataagttcggagggagtaat 9979951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 10674206 - 10674272
Alignment:
Q  68 agatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagggaata 135  Q
    |||||||||| ||||  |||||||| ||||||| || || ||||||||||  ||||||||||||||||    
T  10674206 agatacatcacttacataatgaatctaaaaagtcaa-ttgtttcttataataaggatcggagggaata 10674272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 11668135 - 11668017
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    |||||||||||| ||||||||   ||| |||||||| |  |||| | | || |||| ||| ||||||||  ||||||||||||||||| ||  | |||||    
T  11668135 atttgactttttacattcattgattaattgatgtatcttgtctagaatatagatcaaatatatcatttatgcaatgaatcaaaaaagtcaa-atgtttct 11668037  T
Q  113 tataagtaggatcggaggga 132  Q
    ||||| ||||| ||||||||    
T  11668036 tataaataggaccggaggga 11668017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 45981120 - 45981049
Alignment:
Q  20 ttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaat 91  Q
    |||||| ||||||||||| | ||||||||||  | |||| |||| ||||||||||| | ||| |||||||||    
T  45981120 ttttttaattcattacattaatgatgtattttgtatatactctagatcagatacatgagttattcaatgaat 45981049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 3e-28; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 44111769 - 44111891
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||||| |  |||||||||| |||||||||||||| ||||||| ||| |||    
T  44111769 aaacatttgacttttttgattaattacataaatgatgtatttggtctatattctaaagaagatacatcaattactcaatgaatctaaaaagtcaac-ttt 44111867  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| || || ||||||||    
T  44111868 ttcttataaataagaccggaggga 44111891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 42670888 - 42670770
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||  ||||||| ||||| |||| |||||| ||||||||||| |  |||||||| | |||| |||||||||||||||||||||| ||    
T  42670888 aaacatttgactttttagattcattgcataaatgatatatttggtctatattctaaacgagatacattaattacacaatgaatcaaaaaagttaact-tt 42670790  T
Q  109 ttcttataagtaggatcgga 128  Q
    ||||||||| ||||||||||    
T  42670789 ttcttataaataggatcgga 42670770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 48361176 - 48361054
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||| |  | |||||||| |||||||||||||| ||||||| ||  |||    
T  48361176 aaacatttgacttttttgattcattgcataaatgatgtatttggtctatattctagacaaaatacatcaattactcaatgaatctaaaaagtcaa-attt 48361078  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| ||||| ||||||||    
T  48361077 ttcttataaataggaccggaggga 48361054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 53225669 - 53225790
Alignment:
Q  10 aacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttt 109  Q
    ||||||| |||||||| ||||||| ||||| ||||||||||| |||| |||||||| || |||||| | ||| |||||||||| ||||||| || |||||    
T  53225669 aacattttacttttttgattcattgcataaatgatgtatttggtctacattctataccaaatacattaattattcaatgaatctaaaaagtcaa-ttttt 53225767  T
Q  110 tcttataagtaggatcggaggga 132  Q
    |||||||| ||||| ||||||||    
T  53225768 tcttataaataggaccggaggga 53225790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 21554131 - 21554246
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactt 106  Q
    ||||| ||||||||||||  ||||||| ||||| ||||||||||| |||||||||||||||| |||||| | |||||||||||||| ||||| | ||| |    
T  21554131 aaaaatatttgactttttcgattcattgcataaatgatgtatttggtctatattctatatca-atacattaattactcaatgaatctaaaaaatcaac-t 21554228  T
Q  107 ttttcttataagtaggat 124  Q
    ||||||||||| ||||||    
T  21554229 ttttcttataaataggat 21554246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 48196014 - 48195892
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||||||||||||  |||||| ||||| ||||||||||| ||||||||||| |  |||||| ||| |||||||||||||  |||||||| | ||||    
T  48196014 aaacatttgacttttttggttcattgcataaatgatgtatttggtctatattctagacaagatacgtcaattactcaatgaatttaaaaagtt-agtttt 48195916  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| ||||| | ||||||    
T  48195915 ttcttataaataggaccagaggga 48195892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 30192020 - 30191907
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| |||||||| ||||||| ||||| ||||||||||| ||||||||||| |  | |||||||| |||||||||||||| ||||| | || ||||    
T  30192020 aaacatttaacttttttgattcattgcataaatgatgtatttggtctatattctagacaaaatacatcaattactcaatgaatctaaaaaatcaa-tttt 30191922  T
Q  109 ttcttataagtagga 123  Q
    ||||||||| |||||    
T  30191921 ttcttataaatagga 30191907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 25477567 - 25477660
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagt 100  Q
    ||||| ||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |  | |||||||| |||||||||||||  |||||||    
T  25477567 aaaaatatttgacttttttgattcattgcataaatgatgtatttgatctatattctacacaaaatacatcaattactcaatgaatttaaaaagt 25477660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 45828437 - 45828564
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactt 106  Q
    ||||| |||||| |||||| |||| |||||||| ||||||||||| | |||||| || | || |||||| | |||||||||||||| ||||| | || ||    
T  45828437 aaaaatatttgatttttttgattctttacataaatgatgtatttggtttatattatagaccaaatacattaattactcaatgaatctaaaaaatcaa-tt 45828535  T
Q  107 ttttcttataagtaggatcggagggaata 135  Q
    ||||||||||| ||||| || ||||||||    
T  45828536 ttttcttataaataggaccgaagggaata 45828564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 8347769 - 8347651
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| |||||||  |||| ||||||||| | |||||||| ||||  | |||||||| | |||||||||||| ||||||| ||  |||    
T  8347769 aaacatttgactttttttattcattgtataaatgatgtattcggtctatattttatacaaaatacatcaatcactcaatgaatctaaaaagtcaa-attt 8347671  T
Q  109 ttcttataagtaggatcgga 128  Q
    ||||||||| ||||| ||||    
T  8347670 ttcttataaataggagcgga 8347651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 32714293 - 32714411
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||||||||| ||||||||||  ||||||||||| |  | |||||||| | | | ||||||||  |||||| || ||||    
T  32714293 aaacatttgacttttttgattcattacataaatgatgtatttagtctatattctagacaaaatacatcaatcattgaatgaatc-taaaagtcaattttt 32714391  T
Q  109 ttcttataagtaggatcgga 128  Q
    || |||||| ||||||||||    
T  32714392 tttttataaataggatcgga 32714411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 41116652 - 41116566
Alignment:
Q  43 atgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagg 130  Q
    ||||||||| |||||||| || || |||||||||| |||||||||||||| ||||||||||  |||||||||||| ||||| ||||||    
T  41116652 atgtatttggtctatattttagataagatacatcaattactcaatgaatctaaaaagttaa-atttttcttataaataggaccggagg 41116566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 4386256 - 4386160
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttt 109  Q
    ||||||||||||| ||||||||||||| ||||||||||  |||||||| || || | |||||||| ||||| |||||||  ||||||| || |||||    
T  4386256 atttgacttttttgattcattacataaatgatgtatttagtctatattgtagataaaatacatcaattacttaatgaatttaaaaagtcaaattttt 4386160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 42169069 - 42169180
Alignment:
Q  11 acatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttttt 110  Q
    ||||||||||||||| ||||||||||||| ||||||||||| || |||||| | |  | |||||||| ||| ||||| |||| ||||||| ||  |||||    
T  42169069 acatttgacttttttgattcattacataaatgatgtatttggtccatattcaagacaaaatacatcaattattcaataaatctaaaaagtcaa-attttt 42169167  T
Q  111 cttataagtagga 123  Q
    ||||||| |||||    
T  42169168 cttataaatagga 42169180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 3163021 - 3162912
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactt 106  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||   ||||||||||| |  ||||| || | |||| ||||||||  ||||||| || ||    
T  3163021 aaaaacatttgacttttttgattcattgcataaatgatgtattgagtctatattctagacaagatatattaattacacaatgaatttaaaaagtcaa-tt 3162923  T
Q  107 ttttcttataa 117  Q
    |||||||||||    
T  3162922 ttttcttataa 3162912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 42804368 - 42804260
Alignment:
Q  20 ttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagt 119  Q
    |||||| |||||||| |||  ||||||||||| ||||| ||||| || || ||||||| ||| | |||||||| |||||||||||| ||||||||||| |    
T  42804368 ttttttgattcattaaatagttgatgtatttggtctat-ttctaaattaggtacatcaattattgaatgaatctaaaaagttaact-ttttcttataaat 42804271  T
Q  120 aggatcggagg 130  Q
    |||| ||||||    
T  42804270 aggaccggagg 42804260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 50121561 - 50121461
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||| ||||| |||| |||||| ||||||| ||| |  |||||||||| | | ||||| |||| ||||||| || ||||    
T  50121561 aaacatttgacttttttaattcattgcataaatgatatatttggtctatatactagacaagatacatcaatcattcaataaatctaaaaagtcaaatttt 50121462  T
Q  109 t 109  Q
    |    
T  50121461 t 50121461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 35429801 - 35429880
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatc 92  Q
    ||||||||||||| |||| || |||||  |||||||||| ||||||||||| |  |||||||||| ||||||||| ||||    
T  35429801 atttgactttttttattcgttgcataaaagatgtatttggtctatattctagacaagatacatcaattactcaattaatc 35429880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 45096700 - 45096609
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    ||||||||||||||||||| ||| ||| ||||| |||| |||||| |||||| |||| |  |||||||||| ||| ||||| |||| |||||    
T  45096700 aaaaacatttgacttttttgatttattgcataaatgatatatttggtctataatctagacaagatacatcaattattcaataaatctaaaaa 45096609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 43020879 - 43020759
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||  | || ||||||| ||| | |||||||| |||||||||||| ||    
T  43020879 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggttaggtacatcaattattgaatgaatctaaaaagttaact-tt 43020782  T
Q  109 ttcttataagtaggatcggaggg 131  Q
    ||||||||| ||||| |||||||    
T  43020781 ttcttataaataggaccggaggg 43020759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 696379 - 696499
Alignment:
Q  14 tttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttctt 113  Q
    |||||||||||| ||||||| ||||| ||||| ||||  ||||||||||| |  |||||||| | |||   ||| ||||  |||| ||||| ||||||||    
T  696379 tttgacttttttgattcattgcataaatgatggatttagtctatattctaaacaagatacattaattatataataaatcttaaaaattaac-tttttctt 696477  T
Q  114 ataagtaggatcggagggaata 135  Q
    |||| ||||| |||||||||||    
T  696478 ataaataggaccggagggaata 696499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 764677 - 764797
Alignment:
Q  14 tttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttctt 113  Q
    |||||||||||| ||||||| ||||| ||||| ||||  ||||||||||| |  |||||||| | |||   ||| ||||  |||| ||||| ||||||||    
T  764677 tttgacttttttgattcattgcataaatgatggatttagtctatattctaaacaagatacattaattatataataaatcttaaaaattaac-tttttctt 764775  T
Q  114 ataagtaggatcggagggaata 135  Q
    |||| ||||| |||||||||||    
T  764776 ataaataggaccggagggaata 764797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 16412354 - 16412238
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    ||||||||| ||| |  |||| ||||| | ||||||||| ||||||||||| | || ||| |||| ||| |||||||||| ||||||| || ||||||||    
T  16412354 atttgacttctttgacacattgcataaataatgtatttggtctatattctagaccaaatatatcaattattcaatgaatctaaaaagtcaa-ttttttct 16412256  T
Q  113 tataagtaggatcggagg 130  Q
    ||||| ||| | ||||||    
T  16412255 tataaatagaaccggagg 16412238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 25700559 - 25700486
Alignment:
Q  27 attcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagt 100  Q
    |||||||  |||| |||||||| || |||||||| || |||| |||||||||||||| |||||||| |||||||    
T  25700559 attcattcaataaatgatgtatgtggtctatattgtagatcacatacatcatttactgaatgaatctaaaaagt 25700486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 43117889 - 43117985
Alignment:
Q  20 ttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttataa 117  Q
    |||||| ||| ||| ||||| ||||||||||| |||||||| |||| || |||||||| ||| |||||||||  ||||| | || |||||||||||||    
T  43117889 ttttttgatttattgcataaatgatgtatttggtctatattttataccaaatacatcaattattcaatgaatgtaaaaaatcaa-ttttttcttataa 43117985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 9894717 - 9894630
Alignment:
Q  41 tgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggag 129  Q
    ||||||||||||||||||||||| |  |||||||| | | ||  |||||||| ||||||| ||| |||||||||||| ||||| |||||    
T  9894717 tgatgtatttgatctatattctagacaagatacattaataacataatgaatctaaaaagtcaac-tttttcttataaataggaccggag 9894630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 19150847 - 19150791
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctata 65  Q
    |||||||| |||||||  ||||||| ||||| ||||||||||| |||||||||||||    
T  19150847 aaacattttactttttcgattcattgcataaatgatgtatttggtctatattctata 19150791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 36132663 - 36132766
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    ||||||||||||| |||||||  |||| ||||||||||  ||||||||| | |  ||||||||||  ||||||||| |||  |||||| || ||||||||    
T  36132663 atttgacttttttgattcattgtataaatgatgtatttagtctatattcaagacaagatacatcaactactcaatgtatcttaaaagtcaa-ttttttct 36132761  T
Q  113 tataa 117  Q
    |||||    
T  36132762 tataa 36132766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 55951690 - 55951777
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagt 100  Q
    ||||||||||||| |||| ||| |||| ||||||||||||| ||||||| | |  |||||||| | ||| ||||| |||| |||||||    
T  55951690 atttgacttttttaattcgttatataaatgatgtatttgatttatattcaagacaagatacattaattaatcaataaatctaaaaagt 55951777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 26066484 - 26066410
Alignment:
Q  18 acttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatc 92  Q
    |||||||  |||||||| |||| |||||||| || ||||||||||| | | ||||||||| ||| ||||||||||    
T  26066484 actttttagattcattaaataactgatgtatctggtctatattctagaccggatacatcaattattcaatgaatc 26066410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 50685480 - 50685530
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatat 59  Q
    ||||||||||||||||| ||| ||| ||||| ||||||||||| |||||||    
T  50685480 aaacatttgactttttttattaattccataaatgatgtatttggtctatat 50685530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 9044415 - 9044500
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    ||||||||||||| |||||||  |||| |||||| ||||  |||||||||| |  | |||||||| ||||||||| |||| |||||    
T  9044415 atttgacttttttgattcattgtataaatgatgtctttggcctatattctagacaaaatacatcaattactcaataaatccaaaaa 9044500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 20459265 - 20459384
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| ||||||||||| |||    
T  20459265 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaac-ttt 20459362  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  20459363 ttcttataaataggaccggagg 20459384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 20745354 - 20745473
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactt 106  Q
    ||||||| || |||||||| |||||||  |||  ||||||||||||||||| |||||    || ||||||| ||| | |||||||| ||||| ||||| |    
T  20745354 aaaaacaatttacttttttgattcattgaatagttgatgtatttgatctat-ttctaggctaggtacatcaattattgaatgaatctaaaaaattaac-t 20745451  T
Q  107 ttttcttataagtaggatcgga 128  Q
    ||||||||||| ||||| ||||    
T  20745452 ttttcttataaataggaccgga 20745473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 24100824 - 24100756
Alignment:
Q  68 agatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagggaataat 137  Q
    |||||||| | ||| |||||||||| |||||||||| || ||||||||||  ||||||||||||| ||||    
T  24100824 agatacattaattattcaatgaatctaaaaagttaa-ttatttcttataataaggatcggagggagtaat 24100756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 47866159 - 47866040
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||||| ||    
T  47866159 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaact-tt 47866062  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  47866061 ttcttataaataggaccggagg 47866040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 17284763 - 17284827
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatca 77  Q
    |||||| |||||| ||||||| ||||| |||||||| || ||||||||||| |  ||||||||||    
T  17284763 atttgatttttttgattcattgcataaatgatgtatgtggtctatattctagacaagatacatca 17284827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 43141831 - 43141765
Alignment:
Q  68 agatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagggaata 135  Q
    |||||||||| |||  ||||||| |||||||||||| || ||||||||||  |||| |||||||||||    
T  43141831 agatacatcacttatacaatgaaccaaaaaagttaa-ttgtttcttataataaggaccggagggaata 43141765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 52136762 - 52136696
Alignment:
Q  70 atacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagggaataat 137  Q
    |||||||| |||| ||||||| | |||||||||| |||||||||||||  |||| |||||||| ||||    
T  52136762 atacatcacttacacaatgaacctaaaaagttaa-ttttttcttataataaggaccggagggagtaat 52136696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 54864147 - 54864213
Alignment:
Q  68 agatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagggaata 135  Q
    |||||||||| |||  ||||||| |||||||||||| || ||||||||||  |||| |||||||||||    
T  54864147 agatacatcacttatacaatgaaccaaaaaagttaa-ttgtttcttataataaggaccggagggaata 54864213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 3e-28; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 519857 - 519975
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||| |||  |||| ||||||||||||||||||||||| || |||||||||| |||||||||||||| ||||||||||   ||    
T  519857 aaacatttgacttttttgatttattgtataaatgatgtatttgatctatattctagataagatacatcaattactcaatgaatctaaaaagttaa-aatt 519955  T
Q  109 ttcttataagtaggatcgga 128  Q
    ||||||||| ||||||||||    
T  519956 ttcttataaataggatcgga 519975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 38590093 - 38590191
Alignment:
Q  12 catttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttttt 110  Q
    |||||||||||||| ||||||| ||||| | ||||||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||||    
T  38590093 catttgacttttttgattcatttcataaataatgtatttggtctatattctataccagatacatcaattactcaatgaatctaaaaagttaattttttt 38590191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 38040300 - 38040420
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||| ||||| |||| |||||||||||||||||| |  |||||||||| ||| |||||||||| ||||||| ||  |||    
T  38040300 aaacatttgacttttttgattcattgcataaatgatatatttgatctatattctagacaagatacatcaattaatcaatgaatctaaaaagtcaa-attt 38040398  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  38040399 ttcttataaataggaccggagg 38040420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 38737955 - 38738068
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||| |||||  |||||||||| | ||||||||| |  |||||||||| |||||||||||||| ||||||||||  |||    
T  38737955 aaacatttgacttttttgattcattgcataaaggatgtatttggtttatattctagacaagatacatcaattactcaatgaatctaaaaagttaa-attt 38738053  T
Q  109 ttcttataagtagga 123  Q
    ||||||||| |||||    
T  38738054 ttcttataaatagga 38738068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 44939090 - 44939179
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    ||||||||||||||||| |||||||  |||| ||||||||||| ||||||||||| || |||||||||| |||||||||||||| |||||    
T  44939090 aaacatttgactttttttattcattgtataaatgatgtatttggtctatattctagattagatacatcaattactcaatgaatctaaaaa 44939179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 34146829 - 34146943
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| |||||||| |||||||||| || ||||||||||||| ||||||||| |||| |||||| | ||| |||||||||||||||| | || ||||    
T  34146829 aaacatttaacttttttgattcattacaaaa-tgatgtatttgatatatattctagatcaaatacattaattattcaatgaatcaaaaaaatcaa-tttt 34146926  T
Q  109 ttcttataagtaggatc 125  Q
    ||||||||| |||||||    
T  34146927 ttcttataaataggatc 34146943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 26070948 - 26070857
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagt 100  Q
    |||||||| |||||||| ||||||| ||||| | ||||||||| ||||||||||| || |||||||||| |||||||||||||| |||||||    
T  26070948 aaacattttacttttttgattcattgcataaataatgtatttggtctatattctagataagatacatcaattactcaatgaatctaaaaagt 26070857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 26924337 - 26924215
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| |||||||  |||| ||||||||||| ||||||||||||| ||  ||||| | | |||||||||||  ||||||| ||| |||    
T  26924337 aaacatttgacttttttgattcattgaataaatgatgtatttggtctatattctataccaagtacattaatgactcaatgaatttaaaaagtcaac-ttt 26924239  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| ||||| ||||||||    
T  26924238 ttcttataaataggaccggaggga 26924215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 49944957 - 49944839
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||||| |||||| |||||||  |||| ||||||||||| ||||||||||| |  |||||||||| ||| |||||||||| ||||||||||  |||    
T  49944957 aaacatttgatttttttgattcattgtataaatgatgtatttggtctatattctagacaagatacatcaattattcaatgaatctaaaaagttaa-attt 49944859  T
Q  109 ttcttataagtaggatcgga 128  Q
    ||||||||| ||||| ||||    
T  49944858 ttcttataaataggaccgga 49944839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 50155333 - 50155442
Alignment:
Q  20 ttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagt 119  Q
    |||||| ||||||| ||||| ||||||||||| |||||||| || | || |||||||| |||||||||||||| ||||||| ||| |||||||||||| |    
T  50155333 ttttttaattcattgcataaatgatgtatttggtctatattatagaccaaatacatcaattactcaatgaatctaaaaagtcaac-tttttcttataaat 50155431  T
Q  120 aggatcggagg 130  Q
    |||| ||||||    
T  50155432 aggaccggagg 50155442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 26760197 - 26760319
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| |||||||  |||| ||||||||||| ||||||||||||| ||  ||||| | | |||||||||||  ||||| | || ||||    
T  26760197 aaacatttgacttttttgattcattgaataaatgatgtatttggtctatattctataccaagtacattaatgactcaatgaatttaaaaaatcaa-tttt 26760295  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| ||||| ||||||||    
T  26760296 ttcttataaataggaccggaggga 26760319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 34332600 - 34332509
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagt 100  Q
    ||||||||||||||||| |||||||  |||| ||||||||||| ||||||||||| |  | |||||||| |||||||||||||| |||||||    
T  34332600 aaacatttgacttttttgattcattggataaatgatgtatttggtctatattctagacaaaatacatcaattactcaatgaatctaaaaagt 34332509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 15286033 - 15286115
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaat 91  Q
    ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||| ||  ||||| | ||| |||||||||    
T  15286033 aaacatttgacttttttaattcattatataaatgatgtatttgatctatattctataccaagtacattaattattcaatgaat 15286115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 6661638 - 6661549
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    ||||||||||||||||| ||| ||| ||||| ||||||||||| |||||||||||||  |||||||| | ||||| |||||||| |||||    
T  6661638 aaacatttgacttttttgattaattgcataaatgatgtatttggtctatattctatacaagatacattaattactaaatgaatctaaaaa 6661549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 8971348 - 8971245
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    ||||||||||||| ||||||| ||||| | | || ||||||||||||||||| ||| |||||| | |||||||||||||| || || |||| ||||||||    
T  8971348 atttgacttttttgattcattgcataaataacgtgtttgatctatattctatgtcaaatacattaattactcaatgaatctaacaacttaa-ttttttct 8971250  T
Q  113 tataa 117  Q
    |||||    
T  8971249 tataa 8971245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 11386278 - 11386171
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||  ||||||| ||||| ||||||||||  ||||||||||| | |||| |||||| ||| |||||||||| |||||  | | ||||    
T  11386278 aaacatttgactttttg-attcattgcataaatgatgtatttcgtctatattctagaccagaaacatcaattattcaatgaatctaaaaaaatcaatttt 11386180  T
Q  109 ttcttataa 117  Q
    |||||||||    
T  11386179 ttcttataa 11386171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 15343057 - 15342961
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttt 109  Q
    |||||| |||||| ||||||| ||||| ||||||||||| ||||||||||| |  |||||||| | |||| ||||||||| ||||| | ||||||||    
T  15343057 atttgatttttttgattcattgcataaatgatgtatttggtctatattctagacaagatacattaattacacaatgaatctaaaaattcaacttttt 15342961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 29256634 - 29256751
Alignment:
Q  20 ttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagt 119  Q
    |||||| ||||||| ||||| ||||||||||| ||| |||| |||| || | |||| | |||||||||||||| ||||||| ||| |||||||||||| |    
T  29256634 ttttttgattcattgcataaatgatgtatttggtct-tattttataccaaaaacattaattactcaatgaatctaaaaagtcaac-tttttcttataaat 29256731  T
Q  120 aggatcggagggaataatta 139  Q
    |||| |||||| | ||||||    
T  29256732 aggaccggaggaagtaatta 29256751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 25554643 - 25554570
Alignment:
Q  29 tcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagtta 102  Q
    |||||| |||| |||||||||||  ||||| | ||||||| |||||||||||| |||||||||| |||||||||    
T  25554643 tcattaaataactgatgtatttggcctatagtatatatcacatacatcatttattcaatgaatctaaaaagtta 25554570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 640645 - 640539
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| | ||||||||||||||  |||| | ||||||||  |||||||| || || |||||||||| |||||| ||||||| ||||||| || ||||    
T  640645 aaacatttaatttttttcattcattgtataaattatgtatttagtctatattttagataagatacatcaattactc-atgaatctaaaaagtcaa-tttt 640548  T
Q  109 ttcttataa 117  Q
    |||||||||    
T  640547 ttcttataa 640539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 43929370 - 43929489
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||| |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| ||||||||||| |||    
T  43929370 aaacaatttacttttttgattcattaaatagttgatgtatttggtctat-ttctaagctaggtacatcaattattgaatgaatctaaaaagttaac-ttt 43929467  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  43929468 ttcttataaataggaccggagg 43929489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 34146922 - 34146835
Alignment:
Q  15 ttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaa 103  Q
    |||| |||||| |||||||  |||| | |||||||||||||| | | ||||||| |||||||||||  | |||||||||||||||||||    
T  34146922 ttgatttttttgattcattgaataattaatgtatttgatctagaatatatatcaaatacatcattttgt-aatgaatcaaaaaagttaa 34146835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 9387259 - 9387298
Alignment:
Q  21 tttttcattcattacataagtgatgtatttgatctatatt 60  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  9387259 ttttttattcattacataaatgatgtatttgatctatatt 9387298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 2351195 - 2351130
Alignment:
Q  71 tacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagggaataat 137  Q
    |||| ||||||  |||||||||||||||||||| | ||| ||||||| |||||||||||||| ||||    
T  2351195 tacaacatttatgcaatgaatcaaaaaagttaaatgttt-cttataaataggatcggagggagtaat 2351130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 24305687 - 24305789
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactt 106  Q
    ||||| |||||| |||||| ||||||  ||||| ||||||||  | | |||||||||||  |||||||||| ||||||||| |||  ||||| |||| ||    
T  24305687 aaaaatatttgattttttttattcatcgcataaatgatgtataaggtttatattctatacaagatacatcaattactcaataaatttaaaaaattaaatt 24305786  T
Q  107 ttt 109  Q
    |||    
T  24305787 ttt 24305789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 26924298 - 26924359
Alignment:
Q  70 atacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggaggga 132  Q
    |||||||||||| |||||||||||||||||| ||  | |||||||||| ||||| ||||||||    
T  26924298 atacatcatttattcaatgaatcaaaaaagtcaa-atgtttcttataaataggaccggaggga 26924359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 26760236 - 26760172
Alignment:
Q  70 atacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagggaata 135  Q
    |||||||||||| |||||||||||||||||| ||  | |||||||||| ||||| | |||||||||    
T  26760236 atacatcatttattcaatgaatcaaaaaagtcaa-atgtttcttataaataggacccgagggaata 26760172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 34662805 - 34662686
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||||||||    
T  34662805 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaggctaggtacatcaattattgaatgaatctaaaaagttaactttt 34662707  T
Q  109 ttcttataagtaggatcggagg 130  Q
    || |||||| ||| ||||||||    
T  34662706 tt-ttataaatagaatcggagg 34662686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 47678280 - 47678399
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||||||||| |||||  | || ||||||| ||| | ||||||||  |||||||||  |||    
T  47678280 aaacaatttacttttttgattcattgaatagttgatgtatttgatctat-ttctaggttaggtacatcaattattgaatgaatctcaaaagttaa-attt 47678377  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  47678378 ttcttataaataggaccggagg 47678399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 6793718 - 6793618
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| |||||| | ||||||| ||||| |||||||||||| ||||| | ||||  |  ||||| | ||| |||||||||  ||||| |||||||||    
T  6793718 aaacatttaacttttatgattcattgcataaatgatgtatttgacctataatatatactaagtacattaattattcaatgaatttaaaaaattaactttt 6793619  T
Q  109 t 109  Q
    |    
T  6793618 t 6793618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 23923665 - 23923585
Alignment:
Q  18 acttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    |||||| | ||||||| ||||| ||||| ||||| ||||||||||| |  | |||||| | |||||||||||||| |||||    
T  23923665 acttttctgattcattgcataaatgatgcatttggtctatattctagacaatatacattaattactcaatgaatctaaaaa 23923585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 12018457 - 12018528
Alignment:
Q  27 attcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    |||||||| |||| || ||||| ||| ||||||| ||| |||||||||||| ||| | |||||||| |||||    
T  12018457 attcattaaataaatgttgtatctgagctatattatatttcagatacatcaattatttaatgaatctaaaaa 12018528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 27819333 - 27819436
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgat-gtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaact 105  Q
    ||||| ||||||||||||| ||||||| ||||| ||||  |||||||| |||||| || |  | ||||| ||  || |||||||||| |||||||||| |    
T  27819333 aaaaatatttgacttttttgattcatttcataaatgatattatttgatttatattttagacaaaatacaccaaatattcaatgaatctaaaaagttaaat 27819432  T
Q  106 tttt 109  Q
    ||||    
T  27819433 tttt 27819436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 16448813 - 16448913
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||| ||||| |||| |||||| | |||||||||||| |||||||||| |||||||||||||| |||||||||| ||||    
T  16448813 aaacatttgacttttttgattcattgcataaatgatatatttggtttatattctatataagatacatcaattactcaatgaatctaaaaagttaaatttt 16448912  T
Q  109 t 109  Q
    |    
T  16448913 t 16448913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 5031588 - 5031468
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||  ||||||||||| |  |||||||||| ||||| |||||||  ||||||||||  |||    
T  5031588 aaacatttgacttttttgattcattgcataaatgatgtatttagtctatattctagacaagatacatcaattacttaatgaatttaaaaagttaa-attt 5031490  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  5031489 ttcttataaataggaccggagg 5031468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 7693057 - 7693175
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| |||||||| ||||||| ||||| ||||||||||  |||||||| |||| || |||||| | |||||||||||||| ||||||| || ||||    
T  7693057 aaacattttacttttttgattcattgcataaatgatgtatttagtctatattttataccaaatacattaattactcaatgaatctaaaaagtcaa-tttt 7693155  T
Q  109 ttcttataagtaggatcgga 128  Q
    ||||||||| ||||| ||||    
T  7693156 ttcttataaataggaccgga 7693175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 10184579 - 10184695
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    ||||||||||||| |||||||  |||| ||||||||||| ||||||||||  |||| |||||||| ||| |||||||||| |||||||  | ||||||||    
T  10184579 atttgactttttttattcattgtataaatgatgtatttggtctatattctggatcatatacatcaattattcaatgaatctaaaaagtcga-ttttttct 10184677  T
Q  113 tataagtaggatcggagg 130  Q
    ||||| || |||||||||    
T  10184678 tataaatatgatcggagg 10184695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 15720322 - 15720210
Alignment:
Q  10 aacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttt 109  Q
    ||||||| |||||||| ||||||| ||||| | |||||||||||||||||| |||| || |||||||| |||||| || | || |||||||||| |||||    
T  15720322 aacatttaacttttttgattcattccataaataatgtatttgatctatattttataacaaatacatcaattactctataagtctaaaaagttaa-ttttt 15720224  T
Q  110 tcttataagtagga 123  Q
    |||||||| |||||    
T  15720223 tcttataaatagga 15720210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 42122990 - 42123091
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||| |||||||||||| ||||||| ||||| ||||||||||| | ||||||||| |  |||||||| | |||||||||||||| ||||||| || ||||    
T  42122990 aaacgtttgacttttttgattcattgcataaatgatgtatttggtatatattctagacaagatacattaattactcaatgaatctaaaaagtcaattttt 42123089  T
Q  109 tt 110  Q
    ||    
T  42123090 tt 42123091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 8453619 - 8453737
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||||| |||||| ||||||||||||| | |||||||| |||||||||||| |  ||||| |||| |||||||||| ||| ||||| | ||  |||    
T  8453619 aaacatttgaattttttgattcattacataaataatgtattt-atctatattctagacaagatatatcaattactcaatgtatctaaaaaatcaa-attt 8453716  T
Q  109 ttcttataagtaggatcggag 129  Q
    ||||||||| |||||||||||    
T  8453717 ttcttataaataggatcggag 8453737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 24618982 - 24619070
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaa 97  Q
    |||| |||||||||||| ||||||| ||||| ||||||||||| ||||||||||||| ||  ||||| | |||||||||||||| ||||    
T  24618982 aaacctttgacttttttgattcattgcataaatgatgtatttggtctatattctataacaagtacattaattactcaatgaatctaaaa 24619070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 35149692 - 35149814
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||| ||| ||||| ||||||||||| ||||||||||| |  |||||||| | |||| |||| |||| ||||| | ||| |||    
T  35149692 aaacatttgacttttttgattaattgcataaatgatgtatttggtctatattctagacaagatacattaattacacaataaatctaaaaaatcaac-ttt 35149790  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| ||||| || |||||    
T  35149791 ttcttataaataggaccgaaggga 35149814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 8803354 - 8803252
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactt 106  Q
    ||||| |||| |||||||| ||||||||||||| ||||||||||| ||||||||||| |  |||||||| | ||||  ||| |||  |||||||||||||    
T  8803354 aaaaatatttaacttttttgattcattacataaatgatgtatttggtctatattctagacaagatacattaattacataataaatataaaaagttaactt 8803255  T
Q  107 ttt 109  Q
    |||    
T  8803254 ttt 8803252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 10839875 - 10839774
Alignment:
Q  21 tttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagta 120  Q
    ||||| ||||||| ||||| ||||||||||| ||||||||||||| ||  ||||| | ||| |||||||||| ||||||| || ||||||||||||| ||    
T  10839875 tttttgattcattgcataaatgatgtatttggtctatattctataccaagtacattaattattcaatgaatctaaaaagtcaa-ttttttcttataaata 10839777  T
Q  121 gga 123  Q
    |||    
T  10839776 gga 10839774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 8793839 - 8793755
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaa 97  Q
    ||||||||||||| ||||||| ||||| ||||||||||  |||||||| || | || |||||||| |||||||||||||| ||||    
T  8793839 atttgacttttttgattcattgcataaatgatgtatttagtctatattatagaccaaatacatcaattactcaatgaatctaaaa 8793755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 1223248 - 1223125
Alignment:
Q  8 aaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttt 107  Q
    ||||| ||||||| |||| ||||||| ||||| | ||||||||| |||||||| |  |  |||||||| | |||| ||||||||| ||||||| | ||||    
T  1223248 aaaacttttgactattttaattcattgcataaattatgtatttggtctatatttttgacaagatacattaattacacaatgaatctaaaaagtca-cttt 1223150  T
Q  108 tttcttataagtaggatcggaggga 132  Q
    |||||||||| || || ||||||||    
T  1223149 tttcttataaatatgaccggaggga 1223125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 27789386 - 27789314
Alignment:
Q  26 cattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    ||||||||  |||| ||||||||||| || ||||| |||| ||||||||||| ||| ||||||||||||||||    
T  27789386 cattcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatcaaaaaa 27789314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 32597522 - 32597622
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||||||| | |||  |||||||||  |||||||| |||| ||  ||||| | |||||||||||||   ||||||||||||||    
T  32597522 aaacatttgacttttttgattcattgcgtaaacgatgtattttgtctatattttataccacgtacattaattactcaatgaattttaaaagttaactttt 32597621  T
Q  109 t 109  Q
    |    
T  32597622 t 32597622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 40483311 - 40483407
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttt 109  Q
    |||| |||||||| ||||||| ||||| ||||||||||| || |||||||| || ||||| |||| ||||||||| |||  ||||||| || |||||    
T  40483311 atttaacttttttaattcattgcataaatgatgtatttggtccatattctagataagatatatcaattactcaataaattgaaaaagtcaaattttt 40483407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 3236450 - 3236329
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    ||||||||||||| |||||||  |||| ||||||||||| |||| ||| || |  |||||||||| ||| |||||||||  ||||||| || |||||||     
T  3236450 atttgacttttttaattcattgtataaatgatgtatttggtctaaattttaaactagatacatcaattattcaatgaatttaaaaagtcaa-ttttttc- 3236353  T
Q  113 tataagtaggatcggagggaataat 137  Q
     |||| || ||||||||||| ||||    
T  3236352 -ataaataagatcggagggagtaat 3236329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 36191775 - 36191852
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatc 92  Q
    |||||||||||||| |||||| ||||| |||||||||||   |||||| ||||  |||||||||| ||| ||||||||||    
T  36191775 atttgacttttttctttcattgcataaatgatgtatttg--gtatattttatacaagatacatcaattattcaatgaatc 36191852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 12958899 - 12958782
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||    || ||||||| ||| | |||||||| |||||||||||| ||    
T  12958899 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaagctaggtacatcaattattgaatgaatctaaaaagttaact-tt 12958802  T
Q  109 ttcttataagtaggatcgga 128  Q
    ||||||||| ||||||||||    
T  12958801 ttcttataaataggatcgga 12958782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 4156446 - 4156385
Alignment:
Q  68 agatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggag 129  Q
    |||||||||| |||||||||| ||| || |||| || ||||||||||||| |||||| ||||    
T  4156446 agatacatcaattactcaatgtatctaacaagtcaatttttttcttataaataggattggag 4156385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 6899543 - 6899424
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||||||||| |||||  | || ||||||| ||| | ||||||||  |||||||||  |||    
T  6899543 aaacaatttacttttttgattcattgaatagttgatgtatttgatctat-ttctaggttaggtacatcaattattgaatgaatctcaaaagttaa-attt 6899446  T
Q  109 ttcttataagtaggatcggagg 130  Q
    ||||||||| ||||| ||||||    
T  6899445 ttcttataaataggaccggagg 6899424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 8803313 - 8803372
Alignment:
Q  70 atacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagg 130  Q
    ||||||||||||   ||||||||||||||||||| | |||| |||||| ||||||||||||    
T  8803313 atacatcatttatgtaatgaatcaaaaaagttaaatatttt-ttataaataggatcggagg 8803372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 15726853 - 15726900
Alignment:
Q  79 ttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcgg 127  Q
    |||||||||||||| ||||||| || ||||||||||||| |||||||||    
T  15726853 ttactcaatgaatctaaaaagtcaa-ttttttcttataaataggatcgg 15726900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 22193619 - 22193690
Alignment:
Q  44 tgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttata 116  Q
    ||||| ||||||||||| ||  |||||||||||| ||  |||||||||| ||||||| || ||||||||||||    
T  22193619 tgtatctgatctatattataattcagatacatcagttgttcaatgaatctaaaaagtgaa-ttttttcttata 22193690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 13964457 - 13964528
Alignment:
Q  27 attcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    |||||||  |||| |||||||| || |||||||| || | ||  |||||||||||||||||||||| |||||    
T  13964457 attcattcaataaatgatgtatgtggtctatattatagaccatgtacatcatttactcaatgaatctaaaaa 13964528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 38394552 - 38394430
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| |||||||| ||||||| ||||| ||||||||||| |||| |||||||| ||  ||||| | ||| |||||||||| ||||||| || ||||    
T  38394552 aaacattttacttttttgattcattgcataaatgatgtatttggtctacattctataccaagtacattaattattcaatgaatctaaaaagtcaa-tttt 38394454  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| ||||||||||||||    
T  38394453 ttcttataaataggatcggaggga 38394430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 18473599 - 18473508
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagt 100  Q
    ||||||||||||||||| |||||||  |||| ||||| ||||||||||||||||| |  |||||||||| |||||||||||||| |||||||    
T  18473599 aaacatttgacttttttgattcattgtataaatgatgcatttgatctatattctagacaagatacatcaattactcaatgaatctaaaaagt 18473508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 919670 - 919754
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaa 97  Q
    ||||||||||||| |||||||  |||| ||||||||||| |||||||||||||  |||||||||| |||||||||||||| ||||    
T  919670 atttgacttttttgattcattcaataaatgatgtatttggtctatattctatactagatacatcaattactcaatgaatctaaaa 919754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 5002164 - 5002283
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||||||||||||||| ||| ||| ||||| |||||||||||||||||||| || |  |||||||||| ||||||||| |||| |||||| |||   ||    
T  5002164 aaacatttgacttttttgattaattgcataaatgatgtatttgatctatattttagacaagatacatcaattactcaataaatctaaaaag-taaaaatt 5002262  T
Q  109 ttcttataagtaggatcggag 129  Q
    ||||||||| ||||| |||||    
T  5002263 ttcttataaataggagcggag 5002283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 11932094 - 11931971
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| | |||||| ||| |||| |||| ||||||||||| |||||||| || |  |||||||| | |||| ||||||||| ||||||| || ||||    
T  11932094 aaacatttaatttttttgatttattatataaatgatgtatttggtctatattttagacaagatacattaattacacaatgaatctaaaaagtcaattttt 11931995  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| ||||| ||||||||    
T  11931994 ttcttataaataggaccggaggga 11931971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 34297202 - 34297323
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaact--ttttt 110  Q
    ||||||||||||| ||||||| ||||| ||||||| |||||||||||| || |  ||| |||||| ||||| |||||||| ||||||| || |  |||||    
T  34297202 atttgacttttttaattcattgcataaatgatgtaattgatctatattttagacaagacacatcaattacttaatgaatctaaaaagtcaatttattttt 34297301  T
Q  111 cttataagtaggatcggaggga 132  Q
     |||||| ||||||||||||||    
T  34297302 tttataaataggatcggaggga 34297323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 33478231 - 33478142
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    ||||||||||| ||||| ||||||| ||||| |||||||||||  |||||||||| |  |||||||||| |||||||||||||| |||||    
T  33478231 aaacatttgacatttttgattcattgcataaatgatgtatttggcctatattctagacgagatacatcaattactcaatgaatctaaaaa 33478142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 13789756 - 13789878
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| |||||||| ||||||| ||||| ||||||||||| |||| |||||||| ||  ||||| | ||| ||||||||||  |||||| ||| |||    
T  13789756 aaacattttacttttttgattcattgcataaatgatgtatttggtctacattctataccaagtacattaattattcaatgaatctgaaaagtcaac-ttt 13789854  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| ||| | ||||||||    
T  13789855 ttcttataaatagaaccggaggga 13789878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 36434706 - 36434802
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttt 109  Q
    |||||| |||||| ||||||||||||| |||| |||||| | |||||| || |  |||||||||| ||||| |||||||| |||||||||| |||||    
T  36434706 atttgattttttttattcattacataaatgatatatttggtttatattttagacaagatacatcaattacttaatgaatctaaaaagttaaattttt 36434802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 21488311 - 21488429
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttct 112  Q
    ||||||||||||| ||||||| ||||| | ||||||||| ||||||||||| |  | |||||| | ||||  ||||| |  ||||| ||||| |||||||    
T  21488311 atttgacttttttaattcattgcataaataatgtatttggtctatattctagacaaaatacattaattacataatgagtttaaaaaattaac-tttttct 21488409  T
Q  113 tataagtaggatcggaggga 132  Q
    ||||| ||||||||||||||    
T  21488410 tataaataggatcggaggga 21488429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 13664970 - 13665024
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattcta 63  Q
    ||||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||    
T  13664970 aaacatttgacttttttaattaattgcataaatgatgtatttgatctatattcta 13665024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 39239909 - 39239811
Alignment:
Q  19 cttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttataa 117  Q
    ||||||| ||||||| ||||| | || |||||||||||||||| |||  |||||||| | |||| ||||||||| ||||||  || |||||||||||||    
T  39239909 ctttttttattcattgcataaataatatatttgatctatattcaatacaagatacattaattacacaatgaatctaaaaagacaatttttttcttataa 39239811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 14723476 - 14723409
Alignment:
Q  43 atgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttttt 110  Q
    ||||||||| ||||||||||| || ||||| |||| |||||||||||||  |||||||||| ||||||    
T  14723476 atgtatttggtctatattctagattagatatatcaattactcaatgaatttaaaaagttaattttttt 14723409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 36286089 - 36286174
Alignment:
Q  15 ttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagt 100  Q
    |||| |||||| ||||||| ||||| ||||||| ||| ||||||||||| |   ||||||||| ||||||||| |||| |||||||    
T  36286089 ttgatttttttgattcattgcataaatgatgtagttggtctatattctagacatgatacatcaattactcaattaatctaaaaagt 36286174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 18391525 - 18391573
Alignment:
Q  12 catttgacttttttcattcattacataagtgatgtatttgatctatatt 60  Q
    |||||||||||||| ||||||| ||||| | ||||||||||||||||||    
T  18391525 catttgacttttttgattcattgcataaataatgtatttgatctatatt 18391573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 29299482 - 29299359
Alignment:
Q  9 aaacatttgacttttttca-ttcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttt 107  Q
    ||||||||||||||||| | ||||||  |||| ||||||||| | |||||||| || |  | |||||||| | |||||||||||| ||||| | ||  ||    
T  29299482 aaacatttgacttttttgaattcattgtataaatgatgtattcggtctatattttagacaaaatacatcaatcactcaatgaatctaaaaaatcaa-att 29299384  T
Q  108 tttcttataagtaggatcggaggga 132  Q
    |||||||||| ||||| ||||||||    
T  29299383 tttcttataaataggaccggaggga 29299359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 19295981 - 19296083
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgt-atttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttt 107  Q
    |||| ||||| |||||| |||||||  |||| |||||| ||||| | ||| ||||||| ||  ||||| | |||||||||||||| ||||||| ||||||    
T  19295981 aaacgtttgatttttttgattcattggataaatgatgttatttggtatatcttctataccaagtacattagttactcaatgaatctaaaaagtcaacttt 19296080  T
Q  108 ttt 110  Q
    |||    
T  19296081 ttt 19296083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 1248942 - 1248885
Alignment:
Q  20 ttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatca 77  Q
    |||||| |||||||  |||| ||||||||||||||||||||||| |  ||||||||||    
T  1248942 tttttttattcatttgataaatgatgtatttgatctatattctagacaagatacatca 1248885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 14913164 - 14913248
Alignment:
Q  43 atgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcgga 128  Q
    ||||||||| |||||||| ||||||| ||| || | |||||||||||||  ||||| | ||  |||||||||||| ||||||||||    
T  14913164 atgtatttggtctatattttatatcaaatatattaattactcaatgaatttaaaaaatcaa-atttttcttataaataggatcgga 14913248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 22102028 - 22101943
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    ||||||||||||| ||| |||  |||| | |||||||||||||||||| || |  |||||||| | |||| ||||||||| |||||    
T  22102028 atttgacttttttgatttattgtataaataatgtatttgatctatattttagacaagatacattaattacacaatgaatctaaaaa 22101943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 130
Target Start/End: Complemental strand, 26327627 - 26327539
Alignment:
Q  41 tgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagg 130  Q
    ||||||||||| ||||| || || || || ||||||| ||| | |||||||| |||||||||| ||||||||||||| || || ||||||    
T  26327627 tgatgtatttggtctatttt-tagattaggtacatcaattattgaatgaatctaaaaagttaatttttttcttataaataagaccggagg 26327539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 29031136 - 29031188
Alignment:
Q  85 aatgaatcaaaaaagttaacttttttcttataagtaggatcggagggaataatt 138  Q
    |||||||| ||||||||||| |||||||||||| ||||| |||||||| |||||    
T  29031136 aatgaatctaaaaagttaac-tttttcttataaataggaccggagggagtaatt 29031188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 20502170 - 20502237
Alignment:
Q  68 agatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagggaataa 136  Q
    |||||||||| |||| ||||||| ||||||| |||| || ||||||||||  |||| ||||||||||||    
T  20502170 agatacatcacttacacaatgaaccaaaaaaattaa-ttgtttcttataataaggaccggagggaataa 20502237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 29002807 - 29002744
Alignment:
Q  68 agatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggaggga 132  Q
    |||||||||| |||| ||||||| ||||||||| || || ||||||||||  |||||||||||||    
T  29002807 agatacatcacttacacaatgaaccaaaaaagtcaa-ttgtttcttataacaaggatcggaggga 29002744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 35922163 - 35922107
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctata 65  Q
    ||||| |||| |||||  |||||||| |||| ||||||||||| |||||||||||||    
T  35922163 aaacaattgaatttttaaattcattaaataattgatgtatttggtctatattctata 35922107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 38978825 - 38978888
Alignment:
Q  68 agatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggaggga 132  Q
    |||||||||| |||| ||||||| ||||||| |||| || ||||||||||  |||||||||||||    
T  38978825 agatacatcacttacacaatgaaccaaaaaaattaa-ttgtttcttataataaggatcggaggga 38978888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 1015180 - 1015301
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| || |||||||| |||||||  |||  ||||||||||| ||||| |||||  | || ||||||  ||| | |||||||| ||||||||||| |||    
T  1015180 aaacaatttacttttttgattcattgaatagttgatgtatttggtctat-ttctaagttaggtacatcgattattgaatgaatctaaaaagttaac-ttt 1015277  T
Q  109 ttcttataagtaggatcggaggga 132  Q
    ||||||||| ||| | ||||||||    
T  1015278 ttcttataaatagaaccggaggga 1015301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 3813992 - 3814102
Alignment:
Q  7 aaaaacatttgacttttttc-attcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaact 105  Q
    |||||||||||| ||||||  ||| ||| ||||| | ||||||||  ||||||||||||| ||  ||||| | ||| |||| ||||| ||||||| || |    
T  3813992 aaaaacatttgatttttttttatttattgcataaataatgtatttagtctatattctataccaagtacattaattattcaacgaatctaaaaagtcaa-t 3814090  T
Q  106 tttttcttataa 117  Q
    ||||||||||||    
T  3814091 tttttcttataa 3814102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 14221869 - 14221920
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatatt 60  Q
    ||||||||||||||||| ||| ||| ||||| |||| |||||||| ||||||    
T  14221869 aaacatttgacttttttgattaattgcataaatgatatatttgatttatatt 14221920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 27488412 - 27488346
Alignment:
Q  68 agatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggagggaata 135  Q
    |||||||||| ||| | |||||||| ||||| |||| ||||||||||||| ||||| |||||| ||||    
T  27488412 agatacatcaattattgaatgaatctaaaaaattaa-ttttttcttataaataggaccggaggtaata 27488346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 12999779 - 12999902
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatc-aaaaaagttaacttt 107  Q
    |||||||| |||||||| ||||||| |||||  |||||||||||||||||||||||| ||  ||||| | ||||||||||||||  ||||||| ||| ||    
T  12999779 aaacatttaacttttttgattcattgcataaaagatgtatttgatctatattctataccaagtacattaattactcaatgaatctgaaaaagtcaac-tt 12999877  T
Q  108 tttcttataagtaggatcggaggga 132  Q
    || ||||||| || |||||||||||    
T  12999878 ttacttataaataagatcggaggga 12999902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 12450471 - 12450381
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaa 103  Q
    ||||||||||||| ||||||| ||||| |||||||||| ||||||||| || || | |||||||| ||| |||||||||| ||||||||||    
T  12450471 atttgacttttttaattcattgcataaatgatgtatttaatctatattttagataaaatacatcaattattcaatgaatccaaaaagttaa 12450381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 27909099 - 27909007
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaa-tgaatcaaaaaagt 100  Q
    ||||||||||||||||| |||||||  |||| |||||||||||||||||||| || | | ||||||||| |||||||| |||||| |||||||    
T  27909099 aaacatttgacttttttaattcattgaataattgatgtatttgatctatattttagaccggatacatcaattactcaattgaatctaaaaagt 27909007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 28630877 - 28630759
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    ||||| ||||||||||  ||||||| ||||| | ||||||||| |||||||| || |  |||||||||| ||||||||||||| |||||||| ||  |||    
T  28630877 aaacaattgactttttagattcattgcataaattatgtatttggtctatattatagacaagatacatcaattactcaatgaataaaaaaagtcaa-attt 28630779  T
Q  109 ttcttataagtaggatcgga 128  Q
    ||||||||| ||||| ||||    
T  28630778 ttcttataaataggaccgga 28630759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 17265745 - 17265827
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaat 91  Q
    ||||||||||||||||| ||||||| ||||| ||| ||||||  ||||||||||| |  |||||||||| |||||| ||||||    
T  17265745 aaacatttgacttttttgattcattgcataaatgacgtatttagtctatattctagacaagatacatcaattactcgatgaat 17265827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 30627947 - 30627869
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaat 87  Q
    ||||||||||||||| | ||||||| ||||| ||||||||||| |||||||| || |  |||||||||| |||||||||    
T  30627947 aaacatttgacttttctgattcattgcataaatgatgtatttggtctatattttagacaagatacatcaattactcaat 30627869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 30895308 - 30895252
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctata 65  Q
    ||||||||||||||||| ||||||| ||||| |||| |||||| |||||||||||||    
T  30895308 aaacatttgacttttttgattcattgcataaatgatatatttggtctatattctata 30895252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 2230400 - 2230495
Alignment:
Q  36 ataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttcttataagtaggatcggaggga 132  Q
    |||| ||||||| ||| ||||||||||| |  |||||||| | |||||||||||||| ||||||| ||   ||||||||||| ||||| ||||||||    
T  2230400 ataaatgatgtacttggtctatattctagacaagatacattaattactcaatgaatctaaaaagtcaa-agttttcttataaataggaccggaggga 2230495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 3046737 - 3046686
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatatt 60  Q
    ||||||||||||||||| ||||||||| ||| |||||||| || ||||||||    
T  3046737 aaacatttgacttttttaattcattacttaaatgatgtatgtggtctatatt 3046686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 10283316 - 10283437
Alignment:
Q  7 aaaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcag-atacatcatttactcaatgaatcaaaaaagttaact 105  Q
    ||||| ||||||||||||| ||||||   |||| ||||||||||||| |||||| || | ||| |||||||| ||||||||| |||  ||||| |||| |    
T  10283316 aaaaatatttgacttttttgattcatggtataaatgatgtatttgatatatattttaga-cagtatacatcaattactcaataaatttaaaaaattaa-t 10283413  T
Q  106 tttttcttataagtaggatcggag 129  Q
    |||| ||||||| ||||| |||||    
T  10283414 ttttgcttataaataggaccggag 10283437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 9077706 - 9077656
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattcta 63  Q
    ||||||||||||| ||||||| ||||| ||||| ||||| |||||||||||    
T  9077706 atttgacttttttgattcattgcataaatgatgcatttggtctatattcta 9077656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 3673826 - 3673883
Alignment:
Q  43 atgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagt 100  Q
    |||||| ||||| ||||| ||||||| |||||||||||| | |||||||| |||||||    
T  3673826 atgtatgtgatccatattatatatcatatacatcatttattgaatgaatctaaaaagt 3673883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 12605634 - 12605685
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatatt 60  Q
    ||||| |||| |||||| ||||||||| ||||||||||||||  ||||||||    
T  12605634 aaacaattgattttttttattcattacgtaagtgatgtatttagtctatatt 12605685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 15132138 - 15132083
Alignment:
Q  35 cataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaa 90  Q
    ||||| || ||||||||| ||||||| ||  |||||||||||| ||||||||||||    
T  15132138 cataactggtgtatttgaactatattataagtcagatacatcaattactcaatgaa 15132083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 15467597 - 15467676
Alignment:
Q  13 atttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatc 92  Q
    ||||||||||||  |||||||  || | |||||||| ||||||||||| || |||| |||||||||| | | ||||||||    
T  15467597 atttgactttttagattcatttaattattgatgtatgtgatctatattataaatcacatacatcattaattgaatgaatc 15467676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 45; Significance: 7e-17; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 1556 - 1678
Alignment:
Q  8 aaaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttt 107  Q
    |||||||||||||||||| |||| || ||||| ||||| |||||||||||| |||| | |  |||||||| ||| |||||||||| ||||| |||| |||    
T  1556 aaaacatttgacttttttgattcgttgcataaatgatgcatttgatctatactctaga-ctaatacatcaattattcaatgaatctaaaaaattaa-ttt 1653  T
Q  108 tttcttataagtaggatcggaggga 132  Q
    |||||||||| || || ||||||||    
T  1654 tttcttataaataagaccggaggga 1678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 2609 - 2539
Alignment:
Q  28 ttcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaa 98  Q
    |||||| |||||  ||||||||||||||||||||||||||| |||||| | |||||||||||||| |||||    
T  2609 ttcattgcataaacgatgtatttgatctatattctatatcaaatacattaattactcaatgaatctaaaaa 2539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 40266 - 40162
Alignment:
Q  13 atttgacttttttcattcattacataag-tgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaacttttttc 111  Q
    |||||| |||||| ||||||| |||||  ||||||||||| |||||||| |||||||||||||||| ||||  |||||||| ||| |||||| ||||| |    
T  40266 atttgatttttttaattcattccataaaatgatgtatttggtctatattttatatcagatacatcaattacataatgaatctaaagagttaa-tttttcc 40168  T
Q  112 ttataa 117  Q
    ||||||    
T  40167 ttataa 40162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 16677 - 16757
Alignment:
Q  11 acatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaat 91  Q
    ||||||||||||||| ||||||| |||||   ||||||||| ||||||||||| |  |||||||||| |||||||||||||    
T  16677 acatttgacttttttgattcattgcataaaatatgtatttggtctatattctagacaagatacatcaattactcaatgaat 16757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 16653 - 16553
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||| |||||||||||| |||||||  |||| | ||||||||| |||||||||||    |||| ||||| ||||||||||||| ||||||||||| ||||    
T  16653 aaacgtttgacttttttgattcattgtataaataatgtatttggtctatattctagtcaagatgcatcaattactcaatgaattaaaaaagttaaatttt 16554  T
Q  109 t 109  Q
    |    
T  16553 t 16553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 156792 - 156905
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatatcagatacatcatttactcaatgaatcaaaaaagttaactttt 108  Q
    |||||||| |||||||| ||||||| |||||  ||| |||||| ||||||||||||| ||  ||||| | |||||||||||| | ||||| |  | ||||    
T  156792 aaacatttaacttttttaattcattgcataaacgatatatttggtctatattctataccaagtacattaattactcaatgaaactaaaaaatcta-tttt 156890  T
Q  109 ttcttataagtagga 123  Q
    ||||||||| |||||    
T  156891 ttcttataaatagga 156905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 1558 - 1507
Alignment:
Q  11 acatttgacttttttcattcattacataagtgatgtatttgatctatattcta 63  Q
    ||||||||||||||| ||||||  ||||| |||||||||||||||||||||||    
T  1558 acatttgacttttttgattcatg-cataaatgatgtatttgatctatattcta 1507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 5296 - 5352
Alignment:
Q  9 aaacatttgacttttttcattcattacataagtgatgtatttgatctatattctatat 66  Q
    ||||||||||||||||| ||| ||| ||||| | ||||||||| ||||||||||||||    
T  5296 aaacatttgactttttt-attgattgcataaattatgtatttggtctatattctatat 5352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University