View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5814-1 (Length: 250)
Name: Solexa-NF5814-1
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5814-1 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 7978130 - 7978375
Alignment:
| Q |
2 |
agcaacaacaatgtatgcaacaayaactcctctccacattggaaccttggatggtttctccggtgtcgacggaattgttgcttggatctctaacaccaca |
101 |
Q |
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| T |
7978130 |
agcaacaacaatgtatgcaacaacaactcctctccacattggaaccttggatggtttctccggtgtcgacggaattgttgcttggatctctaacaccaca |
7978229 |
T |
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| Q |
102 |
gtg-gagtagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactgttcctgctgtactatgtgccttatatccatattctacatttt |
200 |
Q |
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| T |
7978230 |
ttgtgtccagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactgttcctgctgtactatgtgccttatatccatattgtacatttt |
7978329 |
T |
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| Q |
201 |
cttgttttcctttatctagactagctgcccaggaaattgtagagta |
246 |
Q |
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| T |
7978330 |
cttgttttcctttatctagactagctgcccaggaaattgtagagta |
7978375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 8042516 - 8042352
Alignment:
| Q |
2 |
agcaacaacaatgtatgcaacaayaactcctctccacattggaaccttggatggtttctccggtgtcgacggaattgttgcttggatctctaacaccaca |
101 |
Q |
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|||||||| |||||| ||||||| ||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
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| T |
8042516 |
agcaacaataatgtaggcaacaacaactcctttccacattggacccttagatggtttctccggtgtagacggaattgttgcttggatctccagcaccaca |
8042417 |
T |
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| Q |
102 |
gtg-gagtagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactgttcctgc |
165 |
Q |
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| T |
8042416 |
atgtgtccagcaaaggcaaatgcaacagagccaagtgcattaaagaaataaaagacagatcctgc |
8042352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 7971197 - 7971361
Alignment:
| Q |
2 |
agcaacaacaatgtatgcaacaayaactcctctccacattggaaccttggatggtttctccggtgtcgacggaattgttgcttggatctctaacaccaca |
101 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||| | |||||| |
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| T |
7971197 |
agcaacaacaatgtatgcaacaataactcctttccacattggacccttagatggtttctcaggtgtagacggaattgttgcttggatctccagcaccac- |
7971295 |
T |
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| Q |
102 |
gtggagt--agcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactgttcctgc |
165 |
Q |
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| T |
7971296 |
gttgtgtccggcaaaggcaaatgcaacagagccaagtgcattaaagaaattaaagacagatcctgc |
7971361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 8032612 - 8032455
Alignment:
| Q |
2 |
agcaacaacaatgtatgcaacaayaactcctctccacattggaaccttggatggtttctccggtgtcgacggaattgttgcttggatctctaacaccaca |
101 |
Q |
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||||||||||||||| ||||||| ||| ||||||||||||||| |||| ||||||||||| ||||| || |||||||||||||||||||| | ||||||| |
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| T |
8032612 |
agcaacaacaatgtaggcaacaacaacacctctccacattggacccttagatggtttctcaggtgtagatggaattgttgcttggatctcgagcaccaca |
8032513 |
T |
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| Q |
102 |
gt-ggagtagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactg |
158 |
Q |
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| T |
8032512 |
ttatgtccagcataggcaaatgcaacagagccgagtgcattaaagaaattaaagactg |
8032455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 2 - 158
Target Start/End: Original strand, 2495 - 2652
Alignment:
| Q |
2 |
agcaacaacaatgtatgcaacaayaactcctctccacattggaaccttggatggtttctccggtgtcgacggaattgttgcttggatctctaacaccaca |
101 |
Q |
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||||||||||||||| ||||||| ||| ||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||| | |||||| |
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| T |
2495 |
agcaacaacaatgtaggcaacaacaacacctctccacattggacccttagatggtttctcaggtgtagacggaattgttgcttggatctccagtaccaca |
2594 |
T |
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| Q |
102 |
gtg-gagtagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactg |
158 |
Q |
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|| | ||||||||||| || |||| |||||||||||||||||| | |||||||| |
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| T |
2595 |
ttgtgtccggcataggcaaacgcgatagagccaagtgcattaaagaaattaaagactg |
2652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 14198106 - 14198179
Alignment:
| Q |
27 |
actcctctccacattggaaccttggatggtttctccggtgtcgacggaattgttgcttggatctctaacaccac |
100 |
Q |
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| T |
14198106 |
actcctctccacattggacccttagatggtttttccggtgtagatggaattgttgcttggatttctaacaccac |
14198179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 43854550 - 43854475
Alignment:
| Q |
26 |
aactcctctccacattggaaccttggatggtttctccggtgtcgacggaattgttgcttggatctctaacaccaca |
101 |
Q |
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| T |
43854550 |
aactcctctccacattggacccttggatggtttctctggtgtggaagggattgttgcttgaatctccaacaccaca |
43854475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 41381634 - 41381798
Alignment:
| Q |
2 |
agcaacaacaatgtatgcaacaayaactcctctccacattggaaccttggatggtttctccggtgtcgacggaattgttgcttggatctctaacaccaca |
101 |
Q |
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| T |
41381634 |
agcaacaaccatgtaggcaaagataactcctttccacattggacccttagatggtttctcaggtgtagatgggattgtagattgaatttccaacaccaca |
41381733 |
T |
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| Q |
102 |
gtg-gagtagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactgttcctgc |
165 |
Q |
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|| | |||||||||||||||| || ||||||||||||||||| | |||||| | |||||| |
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| T |
41381734 |
ttgtgtcctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgc |
41381798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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