View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5814-13 (Length: 157)

Name: Solexa-NF5814-13
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5814-13
Solexa-NF5814-13
[»] chr6 (3 HSPs)
chr6 (7-111)||(33051619-33051722)
chr6 (71-157)||(886484-886570)
chr6 (71-134)||(2918610-2918673)
[»] chr4 (9 HSPs)
chr4 (52-99)||(2467986-2468033)
chr4 (72-114)||(3653580-3653622)
chr4 (59-107)||(29134721-29134769)
chr4 (51-98)||(49867498-49867545)
chr4 (52-107)||(53959047-53959102)
chr4 (59-107)||(44286432-44286480)
chr4 (59-107)||(47928604-47928652)
chr4 (68-107)||(2870497-2870536)
chr4 (59-98)||(49074210-49074249)
[»] chr8 (1 HSPs)
chr8 (49-107)||(39192581-39192639)
[»] chr5 (4 HSPs)
chr5 (59-108)||(10940005-10940054)
chr5 (49-98)||(11088296-11088345)
chr5 (88-157)||(31941300-31941369)
chr5 (52-107)||(36571068-36571123)
[»] chr7 (3 HSPs)
chr7 (62-157)||(35858580-35858675)
chr7 (68-107)||(34590319-34590358)
chr7 (66-107)||(34790463-34790504)
[»] chr3 (2 HSPs)
chr3 (49-107)||(51295131-51295189)
chr3 (68-107)||(6786205-6786244)
[»] chr2 (5 HSPs)
chr2 (49-107)||(31079925-31079983)
chr2 (49-106)||(19983120-19983177)
chr2 (66-134)||(24401380-24401447)
chr2 (49-107)||(39096029-39096087)
chr2 (59-98)||(15318646-15318685)
[»] chr1 (1 HSPs)
chr1 (59-107)||(40901500-40901548)


Alignment Details
Target: chr6 (Bit Score: 72; Significance: 4e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 33051722 - 33051619
Alignment:
Q  7 tagacgatctaggaaaatcataattatatgtannnnnnnnacagattttaagaaaaatttaaagctatttctgtttgttcactatcataaaattcatttt 106  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33051722 tagacgatctaggaaaatcataattatatgtattttttt-acagattttaagaaaaatttaaaactatttctgtttgttcactatcataaaattcatttt 33051624  T
Q  107 tagtt 111  Q
    |||||    
T  33051623 tagtt 33051619  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 886484 - 886570
Alignment:
Q  71 ctatttctgtttgttcactatcataaaattcatttttagtttgttttgaaattcttacacttgactttagtgcattattaaaataaa 157  Q
    ||||||||||||| | |||||||||||| |||||||||||||||||||||| |||||||||||| || | ||||||  |||||||||    
T  886484 ctatttctgtttgcttactatcataaaaatcatttttagtttgttttgaaactcttacacttgatttcattgcatttataaaataaa 886570  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 2918673 - 2918610
Alignment:
Q  71 ctatttctgtttgttcactatcataaaattcatttttagtttgttttgaaattcttacacttga 134  Q
    |||||| |||||| | | |||||||||| | |||||| ||||||||||||| ||||||||||||    
T  2918673 ctatttatgtttgcttattatcataaaaattattttttgtttgttttgaaactcttacacttga 2918610  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 2467986 - 2468033
Alignment:
Q  52 ttttaagaaaaatttaaagctatttctgtttgttcactatcataaaat 99  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||    
T  2467986 ttttaagaaaaatctaaagctatttctgtttgtttactatcataaaat 2468033  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 3653580 - 3653622
Alignment:
Q  72 tatttctgtttgttcactatcataaaattcatttttagtttgt 114  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  3653580 tatttctgtttgttcactatcataaaaatcatttttagtttgt 3653622  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 29134769 - 29134721
Alignment:
Q  59 aaaaatttaaagctatttctgtttgttcactatcataaaattcattttt 107  Q
    |||||| ||||||||||||| |||||| |||||||||||| ||||||||    
T  29134769 aaaaatctaaagctatttctttttgtttactatcataaaaatcattttt 29134721  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 49867545 - 49867498
Alignment:
Q  51 attttaagaaaaatttaaagctatttctgtttgttcactatcataaaa 98  Q
    ||||||| |||||| |||||||||||||||||||| |||| |||||||    
T  49867545 attttaaaaaaaatctaaagctatttctgtttgtttactaacataaaa 49867498  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 53959047 - 53959102
Alignment:
Q  52 ttttaagaaaaatttaaagctatttctgtttgttcactatcataaaattcattttt 107  Q
    |||||| |||||| ||||||||||| |||||||| |||| ||||||| ||||||||    
T  53959047 ttttaaaaaaaatctaaagctatttttgtttgtttactaacataaaaatcattttt 53959102  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 44286432 - 44286480
Alignment:
Q  59 aaaaatttaaagctatttctgtttgttcactatcataaaattcattttt 107  Q
    |||||||||||||||||| |||||||| ||||| |||||| | ||||||    
T  44286432 aaaaatttaaagctatttttgtttgtttactattataaaaattattttt 44286480  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 47928604 - 47928652
Alignment:
Q  59 aaaaatttaaagctatttctgtttgttcactatcataaaattcattttt 107  Q
    |||||| ||||  |||||||||||||  |||||||||||||||||||||    
T  47928604 aaaaatctaaaattatttctgtttgtctactatcataaaattcattttt 47928652  T

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Target: chr4; HSP #8
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 2870536 - 2870497
Alignment:
Q  68 aagctatttctgtttgttcactatcataaaattcattttt 107  Q
    |||||||||||||||||| |||||||||| | ||||||||    
T  2870536 aagctatttctgtttgtttactatcataagaatcattttt 2870497  T

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Target: chr4; HSP #9
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 49074249 - 49074210
Alignment:
Q  59 aaaaatttaaagctatttctgtttgttcactatcataaaa 98  Q
    |||||||||||||||||| |||||| | ||||||||||||    
T  49074249 aaaaatttaaagctatttttgtttgcttactatcataaaa 49074210  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 39192639 - 39192581
Alignment:
Q  49 agattttaagaaaaatttaaagctatttctgtttgttcactatcataaaattcattttt 107  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  39192639 agatttttaaaaaaatttaaagctatttctgtttgtttactatcataaaaatcaatttt 39192581  T

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Target: chr5 (Bit Score: 38; Significance: 0.0000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 10940054 - 10940005
Alignment:
Q  59 aaaaatttaaagctatttctgtttgttcactatcataaaattcattttta 108  Q
    |||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  10940054 aaaaatctaaagctatttctgtttgtttactatcataaaaatcattttta 10940005  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 11088296 - 11088345
Alignment:
Q  49 agattttaagaaaaatttaaagctatttctgtttgttcactatcataaaa 98  Q
    ||||||||| |||||| ||||||||||||| |||||| ||||||||||||    
T  11088296 agattttaaaaaaaatctaaagctatttctatttgtttactatcataaaa 11088345  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 31941369 - 31941300
Alignment:
Q  88 ctatcataaaattcatttttagtttgttttgaaattcttacacttgactttagtgcattattaaaataaa 157  Q
    ||||||| ||| |||||||||||||||||||||| |||||||||| | || | ||||||  |||||||||    
T  31941369 ctatcattaaaatcatttttagtttgttttgaaactcttacacttaagttcattgcatttgtaaaataaa 31941300  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 36571068 - 36571123
Alignment:
Q  52 ttttaagaaaaatttaaagctatttctgtttgttcactatcataaaattcattttt 107  Q
    |||||| |||||| ||||||||||| ||||| || |||||||||||| ||||||||    
T  36571068 ttttaaaaaaaatctaaagctatttttgtttctttactatcataaaaatcattttt 36571123  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 35858580 - 35858675
Alignment:
Q  62 aatttaaagctatttctgtttgttcactatcataaaattcatttttagtttgttttgaaattcttacacttgactttagtgcattattaaaataaa 157  Q
    |||||| | |||||| |||||| | |||||||||||| ||||||||| |||||||||||| ||||  |||||| || | ||||||  |||||||||    
T  35858580 aatttacaactatttttgtttgcttactatcataaaaatcatttttaatttgttttgaaactcttgtacttgatttcattgcatttataaaataaa 35858675  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 34590358 - 34590319
Alignment:
Q  68 aagctatttctgtttgttcactatcataaaattcattttt 107  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  34590358 aagctatttctgtttgtttactatcataaaaatcattttt 34590319  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 34790504 - 34790463
Alignment:
Q  66 taaagctatttctgtttgttcactatcataaaattcattttt 107  Q
    |||||||||||||||||||| |||| ||||||| ||||||||    
T  34790504 taaagctatttctgtttgtttactaacataaaaatcattttt 34790463  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 51295189 - 51295131
Alignment:
Q  49 agattttaagaaaaatttaaagctatttctgtttgttcactatcataaaattcattttt 107  Q
    ||||||||| |||||| | ||||| |||||||||||| |||||||||||| ||||||||    
T  51295189 agattttaaaaaaaatctgaagctgtttctgtttgtttactatcataaaaatcattttt 51295131  T

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Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 6786244 - 6786205
Alignment:
Q  68 aagctatttctgtttgttcactatcataaaattcattttt 107  Q
    ||||||||| |||||||| |||||||||||| ||||||||    
T  6786244 aagctatttttgtttgtttactatcataaaaatcattttt 6786205  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 31079983 - 31079925
Alignment:
Q  49 agattttaagaaaaatttaaagctatttctgtttgttcactatcataaaattcattttt 107  Q
    ||||||| | |||||| ||||||||||| |||||||| |||||||||||| ||||||||    
T  31079983 agatttttaaaaaaatctaaagctatttatgtttgtttactatcataaaaatcattttt 31079925  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 19983120 - 19983177
Alignment:
Q  49 agattttaagaaaaatttaaagctatttctgtttgttcactatcataaaattcatttt 106  Q
    ||||||| | |||||| ||||| |||||||||||||| |||||||||||| |||||||    
T  19983120 agatttttaaaaaaatctaaagttatttctgtttgtttactatcataaaaatcatttt 19983177  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 24401447 - 24401380
Alignment:
Q  66 taaagctatttctgtttgttcactatcataaaattcatttttagtttgttttgaaattcttacacttga 134  Q
    |||| ||||||||||||||| |||||||||||| ||||||||| |  | ||||||| ||||||||||||    
T  24401447 taaatctatttctgtttgtttactatcataaaaatcattttta-taagatttgaaactcttacacttga 24401380  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 39096087 - 39096029
Alignment:
Q  49 agattttaagaaaaatttaaagctatttctgtttgttcactatcataaaattcattttt 107  Q
    ||||||| | ||||||||||| |||||||| |||||| |||||||||||| | ||||||    
T  39096087 agatttttaaaaaaatttaaaactatttctatttgtttactatcataaaaattattttt 39096029  T

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Target: chr2; HSP #5
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 15318685 - 15318646
Alignment:
Q  59 aaaaatttaaagctatttctgtttgttcactatcataaaa 98  Q
    |||||| |||||||||||||||||||| | ||||||||||    
T  15318685 aaaaatctaaagctatttctgtttgtttagtatcataaaa 15318646  T

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Target: chr1 (Bit Score: 33; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 40901548 - 40901500
Alignment:
Q  59 aaaaatttaaagctatttctgtttgttcactatcataaaattcattttt 107  Q
    |||||||||||||||||| |||||| | |||||||||||| ||||||||    
T  40901548 aaaaatttaaagctatttatgtttgcttactatcataaaaatcattttt 40901500  T

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