View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5814-17 (Length: 144)

Name: Solexa-NF5814-17
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5814-17
Solexa-NF5814-17
[»] chr8 (29 HSPs)
chr8 (2-143)||(15255871-15256011)
chr8 (22-143)||(28254834-28254954)
chr8 (22-143)||(599550-599670)
chr8 (22-136)||(16578133-16578246)
chr8 (22-143)||(18049999-18050119)
chr8 (22-136)||(41260669-41260782)
chr8 (1-136)||(41260296-41260430)
chr8 (22-136)||(18049615-18049729)
chr8 (22-136)||(18428169-18428283)
chr8 (29-143)||(9796744-9796857)
chr8 (29-143)||(34799498-34799611)
chr8 (22-123)||(26252847-26252947)
chr8 (29-135)||(6115525-6115631)
chr8 (22-136)||(28254450-28254564)
chr8 (68-143)||(7910634-7910709)
chr8 (29-136)||(35427227-35427333)
chr8 (29-143)||(42035790-42035903)
chr8 (69-136)||(7911070-7911137)
chr8 (20-136)||(42036177-42036293)
chr8 (29-136)||(34799104-34799211)
chr8 (22-136)||(5731220-5731333)
chr8 (22-59)||(35693971-35694008)
chr8 (22-136)||(15256236-15256352)
chr8 (68-143)||(18674166-18674241)
chr8 (29-136)||(9797141-9797248)
chr8 (30-60)||(16578512-16578542)
chr8 (76-136)||(28877350-28877410)
chr8 (69-136)||(2208739-2208806)
chr8 (22-57)||(35694278-35694313)
[»] chr2 (46 HSPs)
chr2 (22-143)||(16175757-16175878)
chr2 (1-143)||(6949829-6949972)
chr2 (29-143)||(38007968-38008082)
chr2 (22-143)||(4355773-4355893)
chr2 (22-143)||(33920630-33920750)
chr2 (22-143)||(43160027-43160148)
chr2 (22-142)||(15550692-15550812)
chr2 (22-143)||(20128145-20128265)
chr2 (22-143)||(42192258-42192378)
chr2 (22-130)||(13399453-13399560)
chr2 (20-143)||(43216115-43216237)
chr2 (29-143)||(9330209-9330323)
chr2 (29-143)||(16953349-16953462)
chr2 (22-136)||(42192650-42192764)
chr2 (22-143)||(649545-649665)
chr2 (22-136)||(11539662-11539776)
chr2 (29-143)||(62975-63088)
chr2 (22-136)||(4808904-4809017)
chr2 (22-136)||(11540046-11540159)
chr2 (69-143)||(25336054-25336128)
chr2 (22-136)||(15551082-15551196)
chr2 (30-136)||(20127761-20127867)
chr2 (22-143)||(32418177-32418295)
chr2 (29-136)||(38008366-38008472)
chr2 (22-136)||(43160418-43160532)
chr2 (22-136)||(13315518-13315634)
chr2 (29-136)||(6949476-6949583)
chr2 (1-136)||(32418534-32418667)
chr2 (29-136)||(33921026-33921133)
chr2 (68-136)||(44220098-44220166)
chr2 (22-136)||(4356164-4356277)
chr2 (68-135)||(63417-63484)
chr2 (22-143)||(44219662-44219782)
chr2 (22-60)||(5560958-5560996)
chr2 (22-129)||(24140087-24140188)
chr2 (75-136)||(20495218-20495279)
chr2 (89-136)||(3824182-3824229)
chr2 (29-60)||(4809294-4809325)
chr2 (69-136)||(5560076-5560143)
chr2 (29-136)||(16952960-16953068)
chr2 (29-136)||(17060931-17061039)
chr2 (93-143)||(5561018-5561068)
chr2 (29-136)||(13399835-13399940)
chr2 (75-136)||(2190536-2190597)
chr2 (22-59)||(22445741-22445778)
chr2 (29-60)||(63373-63404)
[»] chr4 (40 HSPs)
chr4 (22-143)||(34807134-34807255)
chr4 (3-136)||(6617051-6617183)
chr4 (29-143)||(34789797-34789911)
chr4 (20-143)||(54440589-54440709)
chr4 (29-143)||(19528887-19529001)
chr4 (1-136)||(33777999-33778133)
chr4 (22-143)||(24851873-24851994)
chr4 (22-143)||(14439846-14439966)
chr4 (22-143)||(12593431-12593551)
chr4 (22-143)||(21034644-21034765)
chr4 (26-135)||(45838573-45838681)
chr4 (22-143)||(46737063-46737183)
chr4 (29-135)||(55677372-55677478)
chr4 (22-143)||(33689847-33689966)
chr4 (22-136)||(26974308-26974422)
chr4 (22-143)||(28465099-28465219)
chr4 (22-142)||(36168348-36168470)
chr4 (29-136)||(56077739-56077845)
chr4 (22-136)||(34789407-34789520)
chr4 (26-143)||(41608392-41608509)
chr4 (29-136)||(21034260-21034367)
chr4 (32-123)||(26974662-26974753)
chr4 (70-136)||(41608870-41608936)
chr4 (22-129)||(12593056-12593162)
chr4 (29-136)||(28465496-28465602)
chr4 (22-124)||(54440977-54441078)
chr4 (95-143)||(35644042-35644090)
chr4 (22-135)||(45838955-45839069)
chr4 (29-136)||(14440243-14440349)
chr4 (29-135)||(28166030-28166135)
chr4 (1-136)||(33777657-33777791)
chr4 (89-129)||(31297163-31297203)
chr4 (68-136)||(40160119-40160187)
chr4 (29-60)||(34807554-34807585)
chr4 (29-136)||(41114182-41114290)
chr4 (89-136)||(51309979-51310026)
chr4 (22-60)||(24851565-24851603)
chr4 (69-134)||(30597973-30598038)
chr4 (24-60)||(35643968-35644004)
chr4 (29-60)||(35643667-35643698)
[»] chr7 (33 HSPs)
chr7 (4-142)||(5333899-5334036)
chr7 (29-143)||(35161216-35161330)
chr7 (22-143)||(25637215-25637336)
chr7 (22-143)||(27245221-27245342)
chr7 (22-143)||(28687907-28688027)
chr7 (29-143)||(39388682-39388796)
chr7 (29-143)||(16081714-16081827)
chr7 (22-135)||(26026343-26026456)
chr7 (22-142)||(9181817-9181939)
chr7 (29-142)||(786801-786914)
chr7 (29-143)||(7732506-7732619)
chr7 (29-143)||(24929718-24929836)
chr7 (22-136)||(25637606-25637719)
chr7 (29-143)||(48247605-48247722)
chr7 (22-136)||(9181557-9181670)
chr7 (22-136)||(48247999-48248113)
chr7 (22-136)||(5745664-5745777)
chr7 (20-134)||(26048353-26048465)
chr7 (22-143)||(11973810-11973930)
chr7 (69-143)||(5334273-5334347)
chr7 (29-136)||(14311340-14311447)
chr7 (75-135)||(787246-787306)
chr7 (29-136)||(15712390-15712496)
chr7 (22-136)||(27245612-27245725)
chr7 (75-143)||(34595232-34595300)
chr7 (20-136)||(7732893-7733008)
chr7 (84-136)||(16917738-16917790)
chr7 (68-127)||(2758151-2758210)
chr7 (29-143)||(5746054-5746168)
chr7 (29-129)||(14311702-14311801)
chr7 (31-136)||(11971359-11971467)
chr7 (29-135)||(16081325-16081430)
chr7 (75-142)||(4477721-4477788)
[»] chr5 (17 HSPs)
chr5 (1-142)||(5161955-5162096)
chr5 (22-142)||(28289703-28289822)
chr5 (22-135)||(18150131-18150244)
chr5 (1-129)||(18149765-18149892)
chr5 (29-136)||(38900669-38900775)
chr5 (68-136)||(32697679-32697747)
chr5 (22-142)||(21371104-21371223)
chr5 (29-143)||(4967184-4967299)
chr5 (29-142)||(15115510-15115619)
chr5 (22-136)||(28290052-28290165)
chr5 (69-136)||(14340864-14340931)
chr5 (22-136)||(15029717-15029830)
chr5 (22-136)||(8419029-8419141)
chr5 (20-136)||(4966841-4966955)
chr5 (29-127)||(19291390-19291488)
chr5 (22-56)||(21370798-21370832)
chr5 (22-136)||(39083383-39083498)
[»] chr3 (49 HSPs)
chr3 (22-142)||(46013441-46013560)
chr3 (1-135)||(49720748-49720881)
chr3 (1-136)||(329871-330005)
chr3 (22-143)||(51828557-51828678)
chr3 (22-142)||(49720390-49720509)
chr3 (22-136)||(47431721-47431835)
chr3 (29-143)||(52237232-52237345)
chr3 (22-143)||(40839060-40839180)
chr3 (22-143)||(51827975-51828095)
chr3 (21-136)||(16689383-16689497)
chr3 (22-143)||(52375345-52375465)
chr3 (29-136)||(51473270-51473377)
chr3 (22-143)||(34105056-34105178)
chr3 (22-129)||(55389637-55389743)
chr3 (22-136)||(40838677-40838790)
chr3 (29-143)||(44676490-44676603)
chr3 (29-143)||(51472873-51472986)
chr3 (22-143)||(40275502-40275621)
chr3 (22-143)||(49951954-49952074)
chr3 (29-136)||(2044296-2044402)
chr3 (22-129)||(51828365-51828472)
chr3 (29-136)||(330251-330357)
chr3 (22-136)||(22370621-22370735)
chr3 (22-136)||(25534915-25535029)
chr3 (22-143)||(40275111-40275233)
chr3 (29-143)||(41998644-41998756)
chr3 (22-143)||(14654599-14654717)
chr3 (29-143)||(32730407-32730520)
chr3 (22-136)||(38535703-38535816)
chr3 (22-136)||(52236841-52236954)
chr3 (23-136)||(43678320-43678432)
chr3 (29-136)||(41998254-41998361)
chr3 (22-136)||(46013830-46013944)
chr3 (29-136)||(49951571-49951677)
chr3 (75-143)||(39010093-39010161)
chr3 (22-136)||(44676880-44676993)
chr3 (22-136)||(52375739-52375852)
chr3 (29-136)||(16701204-16701313)
chr3 (29-136)||(38535334-38535440)
chr3 (68-136)||(2051320-2051388)
chr3 (22-143)||(30513740-30513860)
chr3 (29-143)||(43678699-43678812)
chr3 (22-136)||(50662820-50662933)
chr3 (26-127)||(51828952-51829052)
chr3 (68-137)||(43222414-43222483)
chr3 (75-122)||(43222850-43222897)
chr3 (82-136)||(14654224-14654278)
chr3 (20-60)||(37847226-37847265)
chr3 (89-136)||(40490745-40490792)
[»] chr6 (14 HSPs)
chr6 (22-143)||(31073550-31073670)
chr6 (35-143)||(25468867-25468976)
chr6 (22-143)||(31574133-31574253)
chr6 (20-135)||(28636318-28636431)
chr6 (29-143)||(5120884-5120997)
chr6 (22-136)||(25472420-25472534)
chr6 (22-136)||(5114493-5114606)
chr6 (1-60)||(31073250-31073309)
chr6 (22-142)||(29891099-29891218)
chr6 (29-136)||(24640600-24640706)
chr6 (22-135)||(30251099-30251212)
chr6 (22-60)||(29891488-29891526)
chr6 (22-60)||(31573825-31573863)
chr6 (22-60)||(28636604-28636642)
[»] chr1 (37 HSPs)
chr1 (31-136)||(443968-444072)
chr1 (29-141)||(16298702-16298813)
chr1 (22-143)||(10278566-10278687)
chr1 (35-143)||(29438948-29439056)
chr1 (29-136)||(30786796-30786903)
chr1 (22-136)||(52335918-52336031)
chr1 (22-136)||(17641772-17641890)
chr1 (22-143)||(34555397-34555519)
chr1 (29-143)||(44582075-44582188)
chr1 (22-143)||(1837523-1837643)
chr1 (29-136)||(37421185-37421293)
chr1 (22-142)||(2868116-2868235)
chr1 (29-143)||(4080039-4080152)
chr1 (22-136)||(23340208-23340321)
chr1 (22-136)||(8230049-8230162)
chr1 (68-136)||(50304464-50304532)
chr1 (1-136)||(29439308-29439443)
chr1 (22-136)||(34555788-34555903)
chr1 (19-136)||(37505092-37505209)
chr1 (29-135)||(37505483-37505587)
chr1 (22-136)||(44954634-44954747)
chr1 (22-134)||(9992182-9992293)
chr1 (29-136)||(21938588-21938694)
chr1 (22-136)||(44954251-44954364)
chr1 (22-143)||(9992563-9992683)
chr1 (22-134)||(10278958-10279066)
chr1 (22-123)||(17641403-17641503)
chr1 (89-136)||(2867936-2867983)
chr1 (84-143)||(23526676-23526735)
chr1 (68-143)||(45048173-45048248)
chr1 (22-60)||(1744427-1744465)
chr1 (22-60)||(8229740-8229778)
chr1 (75-129)||(9833612-9833666)
chr1 (22-60)||(16299090-16299128)
chr1 (75-136)||(50926255-50926316)
chr1 (68-127)||(30787251-30787310)
chr1 (69-136)||(50305239-50305306)
[»] scaffold0097 (1 HSPs)
scaffold0097 (31-136)||(46291-46396)
[»] scaffold0712 (2 HSPs)
scaffold0712 (22-143)||(6799-6924)
scaffold0712 (22-136)||(6417-6530)
[»] scaffold0709 (2 HSPs)
scaffold0709 (22-143)||(6817-6942)
scaffold0709 (22-136)||(6435-6548)
[»] scaffold0025 (1 HSPs)
scaffold0025 (20-60)||(78417-78457)
[»] scaffold0007 (1 HSPs)
scaffold0007 (75-143)||(205827-205895)


Alignment Details
Target: chr8 (Bit Score: 84; Significance: 3e-40; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 15256011 - 15255871
Alignment:
Q  2 tggttggactaaaactgtcatttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaa 101  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||       |||||| |||||| |||||| |||||||||||||    
T  15256011 tggttggactaaaactgtcatttatggagttggaaatagggagataggactaaaactgcaaaaaa-catatagtttagggacgattttgttcgatttaaa 15255913  T
Q  102 agaggtatgaccaatttcgtgagttggtaaaaatgtaaggac 143  Q
    ||||||| |||||||||||||||||||| |||||| ||||||    
T  15255912 agaggtaggaccaatttcgtgagttggtcaaaatgcaaggac 15255871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 28254834 - 28254954
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||        ||||| |||||| |||||| |||||||||||||||||||| ||||||||||||    
T  28254834 tttctggagttggaaatagggagataggactaaaactgcaaaaatt-atatagtttagggacgattttgttcgatttaaaagaggtaggaccaatttcgt 28254932  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  28254933 gagttggtcaaaatgcaaggac 28254954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 599670 - 599550
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||| ||||||||||||       |||||| |||||| | |||| |||||||||||||||||||||||||||||||||    
T  599670 tttctggagttggaaatagggagatatgactaaaactgcaaaaaa-catataatttagggatgattttgttcgatttaaaagaggtatgaccaatttcgt 599572  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  599571 gagttggtcaaaatgcaaggac 599550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 16578246 - 16578133
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||| ||||||||       |||||| |||||| |||||| |||||||||||||||||||| ||||||||||||    
T  16578246 tttctggagttggaaatagggagataggaccaaaactgcaaaaaa-catataatttagggacgattttgttcgatttaaaagaggtaggaccaatttcgt 16578148  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  16578147 gagttggtcaaaatg 16578133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 18049999 - 18050119
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| |||||||||||||||| |||||| ||       |||||| |||||| |||||| |||||||||||||||||||||||||||||||||    
T  18049999 tttctggagttgaaaatagggagataggattaaaacagcaaaaaa-catatagtttagggacgattttgttcgatttaaaagaggtatgaccaatttcgt 18050097  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  18050098 gagttggtcaaaatgcaaggac 18050119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 41260669 - 41260782
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| ||||||||||||||||||||||||||       |||||| |||||| |||||| ||||||||||||||||||||||| |||||||||    
T  41260669 tttctggagttgaaaatagggagataggactaaaactgcaaaaaa-catatagtttagggacgattttgttcgatttaaaagaggtatgatcaatttcgt 41260767  T
Q  122 gagttggtaaaaatg 136  Q
    |||||| | ||||||    
T  41260768 gagttgatcaaaatg 41260782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 41260430 - 41260296
Alignment:
Q  1 gtggttggactaaaactgtcatttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaa 100  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||||       |||||| |||| | |||||| ||||||||||||    
T  41260430 gtggttggactaaaagtgtcatttctagagttggaaatagggagataagactaaaactgc-aaaaaacatatagtttaaggacgattttgttcgatttaa 41260332  T
Q  101 aagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    || || || ||||| |||| ||||||||| ||||||    
T  41260331 aaaagataggaccattttcatgagttggtcaaaatg 41260296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 18049729 - 18049615
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| || ||  |||| ||||||    
T  18049729 tttctggagttggaaatagggagataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagatagaaccattttcgt 18049630  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  18049629 gagttggtcaaaatg 18049615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 18428169 - 18428283
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||||||||||||||||||||| |||||||||       |||||| |||| | |||||| |||||||||||||| || || ||||| ||||||    
T  18428169 tttctggagttggaaatagggagataggagtaaaactgcaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgt 18428268  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  18428269 gagttggtcaaaatg 18428283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 9796857 - 9796744
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||| ||||||||||||       |||||| |||| | | |||| |||||||||||||||||||| ||||||||| |||||||||    
T  9796857 agttggaaatagggagatatgactaaaactgcaaaaaa-catatagtttatggatgattttgttcgatttaaaagaggtaggaccaattttgtgagttgg 9796759  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  9796758 tcaaaatgcaaggac 9796744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 34799498 - 34799611
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||| ||||||||||||||||||       |||||| |||||| || ||| |||||||||||||||||||| |||||||||||| | ||||    
T  34799498 agttggaaataggaagataggactaaaactgcaaaaaa-catatagtttagggacaattttgttcgatttaaaagaggtaggaccaatttcgttaattgg 34799596  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  34799597 tcaaaatgaaaggac 34799611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 26252947 - 26252847
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||||| |||||| ||||||||||||||||| | | |||||||||||    
T  26252947 tttctggagttggaaatagggagataggactaaaactgc-acaaaacatatagtttagggacgattttgttcgatttaaaagagatgttaccaatttcgt 26252849  T
Q  122 ga 123  Q
    ||    
T  26252848 ga 26252847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 6115525 - 6115631
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||| ||||| |||||||| ||||||||| |       |||||| |||||| |||||| |||||||||||||||||||| ||||||||||| |||||||    
T  6115525 agttgaaaataaggagatagaactaaaactacaaaaaaacatatagtttagggacgattttgttcgatttaaaagaggtaggaccaatttcgcgagttgg 6115624  T
Q  129 taaaaat 135  Q
    | |||||    
T  6115625 tcaaaat 6115631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 28254564 - 28254450
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| ||||| |||||||| || || ||||| ||||||    
T  28254564 tttctggagttggaaatagggagataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcaatttaaaatagataggaccattttcgt 28254465  T
Q  122 gagttggtaaaaatg 136  Q
    |||||| | ||||||    
T  28254464 gagttgatcaaaatg 28254450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 7910709 - 7910634
Alignment:
Q  68 catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatgtaaggac 143  Q
    |||||| |||||| |||||| ||||||||||||||||||||| |||| |||||||||||| | ||||||| |||||    
T  7910709 catataatttagggacgattttgttcgatttaaaagaggtataaccattttcgtgagttgatcaaaatgtgaggac 7910634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 35427227 - 35427333
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    |||||||||||||||||| |||||||||||||        ||||| |||||| |||||| |||||| |||||||||||||  |||| |||||||||||||    
T  35427227 agttggaaatagggagatgggactaaaactgcaaaaaat-atataatttagggacgattttgttcggtttaaaagaggtagaaccattttcgtgagttgg 35427325  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  35427326 tcaaaatg 35427333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 42035903 - 42035790
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    |||| ||||||||||||||||||||||| |||        ||||| |||| | |||||| ||||||||||||||||||||  |||| |||||||||||||    
T  42035903 agttagaaatagggagataggactaaaattgcaaaatat-atatagtttatggacgattttgttcgatttaaaagaggtagaaccattttcgtgagttgg 42035805  T
Q  129 taaaaatgtaaggac 143  Q
    | ||||||| |||||    
T  42035804 tcaaaatgtgaggac 42035790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 7911070 - 7911137
Alignment:
Q  69 atatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    ||||| |||||| |||||| ||||||||||||||||||||  |||| |||||||||||||| ||||||    
T  7911070 atatagtttagggacgattttgttcgatttaaaagaggtagaaccattttcgtgagttggtcaaaatg 7911137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 42036177 - 42036293
Alignment:
Q  20 catttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttc 119  Q
    |||||||| ||||||||||| |   ||| ||||||||||||       |||||| |||||| |||||| |||||||||||||||||||| || || ||||    
T  42036177 catttctggagttggaaatatgagaatacgactaaaactgcaaaaaaacatatagtttagggacgattttgttcgatttaaaagaggtaagatcattttc 42036276  T
Q  120 gtgagttggtaaaaatg 136  Q
    || ||||||| ||||||    
T  42036277 gtaagttggtcaaaatg 42036293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 34799211 - 34799104
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       |||||| |||| | |||| | |||||||||||||| |  || ||||| |||| ||||||||    
T  34799211 agttggaaatagggagataggactaaaactgcaaaaaaacatatagtttaaggacgactttgttcgatttaaaaaaaataggaccattttcatgagttgg 34799112  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  34799111 tcaaaatg 34799104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 5731220 - 5731333
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| |||||||||||||| |||||||||||       |||||| |||| | |||||| ||||||||||| || |||||  ||||||||| |    
T  5731220 tttctggagttgaaaatagggagatagaactaaaactgcaaaaaa-catatagtttatggacgattttgttcgatttataaaaggtagaaccaatttcct 5731318  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  5731319 gagttggtcaaaatg 5731333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 35694008 - 35693971
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactg 59  Q
    |||||| |||||||||||||||||||||||||||||||    
T  35694008 tttctggagttggaaatagggagataggactaaaactg 35693971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 15256236 - 15256352
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnn--catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttc 119  Q
    |||||| ||||||||||||||||||| ||||| ||||||         |||||| |||| | |||||| |||||||||||||| || || ||||| ||||    
T  15256236 tttctggagttggaaatagggagatatgactagaactgcaaaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataggaccattttc 15256335  T
Q  120 gtgagttggtaaaaatg 136  Q
     ||||||||| ||||||    
T  15256336 atgagttggtcaaaatg 15256352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 18674241 - 18674166
Alignment:
Q  68 catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatgtaaggac 143  Q
    |||||| |||||| |||||| ||||||||||||||| || |  ||||||||||||| ||||| ||| || ||||||    
T  18674241 catatagtttagggacgattttgttcgatttaaaagtggaagaaccaatttcgtgaattggtcaaagtgcaaggac 18674166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 9797141 - 9797248
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||| |||||| |||||||||||       |||||| |||| | |||||| | || ||||||||| || ||  |||| |||||||||||||    
T  9797141 agttggaaataggtagatagaactaaaactgcaaaaaaacatatagtttaaggacgattttatttgatttaaaaaagatagaaccattttcgtgagttgg 9797240  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  9797241 tcaaaatg 9797248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 16578512 - 16578542
Alignment:
Q  30 gttggaaatagggagataggactaaaactgc 60  Q
    |||||||||||||||||||||||||||||||    
T  16578512 gttggaaatagggagataggactaaaactgc 16578542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 28877350 - 28877410
Alignment:
Q  76 ttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    ||||| || ||| ||||| |||| |||||||||| |||| |||||||||||||| ||||||    
T  28877350 ttagggacaattttgttcaatttgaaagaggtataaccattttcgtgagttggtcaaaatg 28877410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 2208806 - 2208739
Alignment:
Q  69 atatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    ||||| |||| | |||||| |||||||||||||| || || ||| | |||||||||||||| ||||||    
T  2208806 atatagtttaaggacgattttgttcgatttaaaaaagataggacaattttcgtgagttggtcaaaatg 2208739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 35694278 - 35694313
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaac 57  Q
    |||||| ||||||||||||||||||| |||||||||    
T  35694278 tttctggagttggaaatagggagataagactaaaac 35694313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 2e-38; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 16175757 - 16175878
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||||||||||||||||||||||    
T  16175757 tttctggagttggaaatagggagataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcgatttaaaagaggtatgaccaatttcgt 16175856  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    ||||||||||||||||||||||    
T  16175857 gagttggtaaaaatgtaaggac 16175878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 6949829 - 6949972
Alignment:
Q  1 gtggttggactaaaactgtcatttctgaagttggaaatagggagataggactaaaactgc-nnnnnnncatatactttaggaacgattctgttcgattta 99  Q
    ||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||         ||||| |||||| |||||| ||||| |||||    
T  6949829 gtggttggactaaaactgtcatttctggagtttgaaatatggagataggactaaaactgcaaaaaaaaaatatagtttagggacgattttgttctattta 6949928  T
Q  100 aaagaggtatgaccaatttcgtgagttggtaaaaatgtaaggac 143  Q
    ||||| ||| |||||||||||||||||||| |||||| ||||||    
T  6949929 aaagatgtaggaccaatttcgtgagttggtcaaaatgcaaggac 6949972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 38008082 - 38007968
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||| ||||||||||||       |||||| |||||| |||||| |||||||||||||||||||| |||||||||||||||||||    
T  38008082 agttggaaatagggagatatgactaaaactgcaaaaaaacatatagtttagggacgattttgttcgatttaaaagaggtaggaccaatttcgtgagttgg 38007983  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  38007982 tcaaaatgcaaggac 38007968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 4355893 - 4355773
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| ||||||||||||||||||||||||||       |||||| |||||| |||||| |||||||||||||||||||||||||||||||||    
T  4355893 tttctggagttgaaaatagggagataggactaaaactgcaaaaaa-catatagtttagggacgattttgttcgatttaaaagaggtatgaccaatttcgt 4355795  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||| ||| |||||| ||||||    
T  4355794 gagtaggtcaaaatgcaaggac 4355773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 33920750 - 33920630
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| ||||||||||||||||||||||||||       |||||| |||||| |||||| ||||||||||||||||||||||| |||||||||    
T  33920750 tttctggagttgaaaatagggagataggactaaaactgcaaaaat-catatagtttagggacgattttgttcgatttaaaagaggtatgatcaatttcgt 33920652  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  33920651 gagttggtcaaaatgcaaggac 33920630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 43160148 - 43160027
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| ||||||||||||||||||||||||||         |||| |||||| |||||| |||||||||||||||||||||||||||||||||    
T  43160148 tttctggagttgaaaatagggagataggactaaaactgcaaaaaaatgtatagtttagggacgattttgttcgatttaaaagaggtatgaccaatttcgt 43160049  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||| | |||||| ||||||    
T  43160048 gagttgatcaaaatgcaaggac 43160027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 15550812 - 15550692
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| ||||||||| ||||||||||||||||       |||||| |||||| |||||| |||||||||||||||||||| ||||||||||||    
T  15550812 tttctggagttgaaaatagggaaataggactaaaactgcaaaaaaacatatagtttagggacgattttgttcgatttaaaagaggtaggaccaatttcgt 15550713  T
Q  122 gagttggtaaaaatgtaagga 142  Q
    |||||||| | |||| |||||    
T  15550712 gagttggtcagaatgcaagga 15550692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 20128145 - 20128265
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||||||||||||||||||||||||||| |||       |||||| |||| | |||||| |||| ||||||||||||||| ||||||||||||    
T  20128145 tttctggagttggaaatagggagataggactaaaattgcaaaaaa-catatagtttaaggacgattttgtttgatttaaaagaggtaggaccaatttcgt 20128243  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    ||||||||||||||| ||||||    
T  20128244 gagttggtaaaaatgcaaggac 20128265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 42192378 - 42192258
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||| |||||||||||||||||||||||||||       |||||| |||||| |||||| |||||||||||||||||||| ||||| ||||||    
T  42192378 tttctggagttagaaatagggagataggactaaaactgcaaaaaa-catatagtttagggacgattttgttcgatttaaaagaggtaggaccattttcgt 42192280  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| ||||||| |||||    
T  42192279 gagttggtcaaaatgtgaggac 42192258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 13399560 - 13399453
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||||| |||||| ||||| |||||||||||||||||||||||||||    
T  13399560 tttctggagttggaaatagggagataggactaaaactgcaaaaaa-catatagtttagggacgattttgttccatttaaaagaggtatgaccaatttcgt 13399462  T
Q  122 gagttggta 130  Q
    || ||||||    
T  13399461 gaattggta 13399453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 43216115 - 43216237
Alignment:
Q  20 catttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttc 119  Q
    |||||||| |||||||||||| |||||||||||||||||||        ||||| |||||| |||||| |||||||||||||||||||| ||||||||||    
T  43216115 catttctggagttggaaatagagagataggactaaaactgcaaaaaat-atatagtttagggacgattttgttcgatttaaaagaggtaggaccaatttc 43216213  T
Q  120 gtgagttggtaaaaatgtaaggac 143  Q
    |||||||||| |||| | ||||||    
T  43216214 gtgagttggtcaaaacgcaaggac 43216237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 9330209 - 9330323
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||| ||||||| ||||||||||||||||||       |||||| ||| || |||||| |||||||||||||||||||||||| |||||||||||||||    
T  9330209 agttgaaaataggtagataggactaaaactgcaaaaaaacatatagtttggggacgattttgttcgatttaaaagaggtatgacaaatttcgtgagttgg 9330308  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  9330309 tcaaaatgcaaggac 9330323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 16953349 - 16953462
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||| ||  || |||||||||||||||||||| |||||||||| ||||||||    
T  16953349 agttggaaatagggagataggactaaaactgcaaaaaa-catatactttagggacatttttgttcgatttaaaagaggtaggaccaatttcatgagttgg 16953447  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  16953448 tcaaaatgcaaggac 16953462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 42192650 - 42192764
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||||||||||||| |||| ||||||||||||       ||| || |||||| |||||| |||||||||||||||||||| ||||| ||||||    
T  42192650 tttctggagttggaaatagggggatatgactaaaactgcaaaaaaacatctagtttagggacgattttgttcgatttaaaagaggtaggaccattttcgt 42192749  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  42192750 gagttggtcaaaatg 42192764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 649665 - 649545
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||| || |||||||||||       |||||| |||||| |||||| |||||||||||||||||||| ||||||||||||    
T  649665 tttctggagttggaaatagggagacagaactaaaactgcaaaaaa-catatagtttagggacgattttgttcgatttaaaagaggtaggaccaatttcgt 649567  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
     ||||||| || ||| ||||||    
T  649566 aagttggtcaagatgcaaggac 649545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 11539776 - 11539662
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| |  || ||||| ||||||    
T  11539776 tttctggagttggaaatagggagataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaaaataggaccattttcgt 11539677  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  11539676 gagttggtcaaaatg 11539662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 63088 - 62975
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||| ||| ||||| ||||| |||||||||||||    
T  63088 agttggaaatagggagataggactaaaactgcaaaaaa-catatagtttaaggacgattttgttcgattttaaaaaggtaggaccattttcgtgagttgg 62990  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  62989 tcaaaatggaaggac 62975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 4809017 - 4808904
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||| |||||||||||||||| |       |||||| |||| | |||||| |||||||||||||||||||| || |||||||||    
T  4809017 tttctggagttggaaataggaagataggactaaaactacaaaaaa-catatagtttatggacgattttgttcgatttaaaagaggtaggatcaatttcgt 4808919  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  4808918 gagttggtcaaaatg 4808904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 11540046 - 11540159
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||| ||| ||||||||||||       |||||| |||| | |||||| |||||||||||||||||||| ||||| ||||||    
T  11540046 tttctggagttggaaatagggatatatgactaaaactgcaaaaaa-catatagtttatggacgattttgttcgatttaaaagaggtaggaccattttcgt 11540144  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  11540145 gagttggtcaaaatg 11540159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 25336054 - 25336128
Alignment:
Q  69 atatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatgtaaggac 143  Q
    ||||| |||||| |||||| |||||||||||||||| ||| |||||||||||||||||||| |||||| ||||||    
T  25336054 atataatttagggacgattttgttcgatttaaaagaagtaggaccaatttcgtgagttggtcaaaatgcaaggac 25336128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 15551082 - 15551196
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       ||||||  ||| | |||||| |||||||||||||| |  |||||||| ||| ||    
T  15551082 tttctggagttggaaatagggagataggactaaaactgcaaaaaaacatataacttaaggacgattttgttcgatttaaaaaatatatgaccatttttgt 15551181  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  15551182 gagttggtcaaaatg 15551196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 20127867 - 20127761
Alignment:
Q  30 gttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggt 129  Q
    |||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| || || ||||| |||||||| |||||    
T  20127867 gttggaaatagggagataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgtgaattggt 20127768  T
Q  130 aaaaatg 136  Q
     ||||||    
T  20127767 caaaatg 20127761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 32418295 - 32418177
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||| ||||||| ||||||||||||        ||||| |||||| |||||| |||||||||  ||||||||| ||||||||||||    
T  32418295 tttctggagttggaaataaggagatatgactaaaactgcaaaaaat-atatagtttagggacgattttgttcgatt--aaagaggtaggaccaatttcgt 32418199  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  32418198 gagttggtcaaaatgcaaggac 32418177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 38008366 - 38008472
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| || || ||||| |||||||||||||    
T  38008366 agttggaaatagggagataggactaaaactgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgtgagttgg 38008464  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  38008465 tcaaaatg 38008472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 43160418 - 43160532
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| | ||||||  ||||||||||||| || || ||||| ||||||    
T  43160418 tttctggagttggaaatagggagataggactaaaactgcaaaaaaacatatagtttaaggacgatttagttcgatttaaaaaagataggaccattttcgt 43160517  T
Q  122 gagttggtaaaaatg 136  Q
    ||||| || ||||||    
T  43160518 gagtttgtcaaaatg 43160532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 13315634 - 13315518
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgc--nnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttc 119  Q
    |||||| ||||||||||||||||||||||||||||||||         |||||| |||| | |||||| |||||||||||||| || |||||||| ||||    
T  13315634 tttctggagttggaaatagggagataggactaaaactgcaaaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagatatgaccattttc 13315535  T
Q  120 gtgagttggtaaaaatg 136  Q
     ||||||||| ||||||    
T  13315534 atgagttggtcaaaatg 13315518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 6949583 - 6949476
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       |||||| || | | |||||| |||||||||||||| || || ||||| ||||||||||| |    
T  6949583 agttggaaatagggagataggactaaaactgcaaaaaaacatatagttaaaggacgattttgttcgatttaaaaaagataggaccattttcgtgagttag 6949484  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  6949483 tcaaaatg 6949476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 32418534 - 32418667
Alignment:
Q  1 gtggttggactaaaactgtcatttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaa 100  Q
    |||||||||||||||||| | |||||  ||||||||||||||||||| || |||||||||        ||||| |||| | |||||| ||||||||||||    
T  32418534 gtggttggactaaaactg-cgtttctagagttggaaatagggagataagattaaaactgcaaaaaat-atatagtttaaggacgattttgttcgatttaa 32418631  T
Q  101 aagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    ||||||||  | ||||||||||| ||||| ||||||    
T  32418632 aagaggtagaatcaatttcgtgaattggtcaaaatg 32418667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 33921026 - 33921133
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       ||| || ||||   |||||| |||||||||||||| || || ||||| |||||||||||||    
T  33921026 agttggaaatagggagataggactaaaactgcaaaaaaacatttagtttaaagacgattttgttcgatttaaaaaagataggaccattttcgtgagttgg 33921125  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  33921126 tcaaaatg 33921133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 44220098 - 44220166
Alignment:
Q  68 catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    |||||| |||||| |||||| |||| ||||||||| ||||||||||| |||||||||||||| ||||||    
T  44220098 catatagtttagggacgattttgtttgatttaaaaaaggtatgaccattttcgtgagttggtcaaaatg 44220166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 4356164 - 4356277
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||| |||| | |||||||||       |||||| |||| | |||||| |||||||||||||| || |||||||| | ||||    
T  4356164 tttctggagttggaaatagggaaatagaattaaaactgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaaaagatatgaccattatcgt 4356262  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  4356263 gagttggtcaaaatg 4356277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 63417 - 63484
Alignment:
Q  68 catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaat 135  Q
    |||||| |||||| |||||| |||| |||||||||||| || ||||| |||||||||||||| |||||    
T  63417 catatagtttagggacgattttgtttgatttaaaagagataagaccattttcgtgagttggtcaaaat 63484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 44219782 - 44219662
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||| ||||||||||||||||||||||       |||||| |||| | || ||| |||||||||||||| ||||| || || ||| ||    
T  44219782 tttctggagttggaaacagggagataggactaaaactgc-aaaaaacatataatttaaggacaattttgttcgatttaaaaaaggtaggatcatttttgt 44219684  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||| | |||||| ||||||    
T  44219683 gagttgatcaaaatggaaggac 44219662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 5560958 - 5560996
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgc 60  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  5560958 tttctggagttggaaatagggagataggactaaaactgc 5560996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 24140087 - 24140188
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||| |||| |||||||||||        ||||| |||| | |||||| |||| ||||||||| ||||| ||||| ||||||    
T  24140087 tttctggagttggaaatagggatatagaactaaaactgcaa------atatagtttatggacgattttgtttgatttaaaaaaggtaggaccattttcgt 24140180  T
Q  122 gagttggt 129  Q
    ||||||||    
T  24140181 gagttggt 24140188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 20495279 - 20495218
Alignment:
Q  75 tttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    |||||| |||||| |||| ||||||||||||| |||| || |||||||||||||| ||||||    
T  20495279 tttagggacgattttgttagatttaaaagaggcatgatcattttcgtgagttggtcaaaatg 20495218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 3824182 - 3824229
Alignment:
Q  89 tgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    ||||||||||||||  || |||||||||||||||||||||| ||||||    
T  3824182 tgttcgatttaaaaagggcatgaccaatttcgtgagttggttaaaatg 3824229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 60
Target Start/End: Original strand, 4809294 - 4809325
Alignment:
Q  29 agttggaaatagggagataggactaaaactgc 60  Q
    ||||||||||||||||||||||||||||||||    
T  4809294 agttggaaatagggagataggactaaaactgc 4809325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 5560143 - 5560076
Alignment:
Q  69 atatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    ||||| |||| | |||||| ||||| |||||||| || |||||||| |||||||||||||| ||||||    
T  5560143 atatagtttaaggacgattttgttcaatttaaaaaagatatgaccattttcgtgagttggtcaaaatg 5560076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 16953068 - 16952960
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnn-catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttg 127  Q
    ||||||||||||||||||| ||||||||| ||        |||||| |||| | |||||| |||||||||||||| || || ||| | ||||||||||||    
T  16953068 agttggaaatagggagatatgactaaaaccgcaaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataagacaattttcgtgagttg 16952969  T
Q  128 gtaaaaatg 136  Q
    || ||||||    
T  16952968 gtcaaaatg 16952960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 17061039 - 17060931
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnn-catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttg 127  Q
    ||||||||||||||||||| ||||||||| ||        |||||| |||| | |||||| |||||||||||||| || || ||| | ||||||||||||    
T  17061039 agttggaaatagggagatatgactaaaaccgcaaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataagacaattttcgtgagttg 17060940  T
Q  128 gtaaaaatg 136  Q
    || ||||||    
T  17060939 gtcaaaatg 17060931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 5561018 - 5561068
Alignment:
Q  93 cgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatgtaaggac 143  Q
    |||||||||||||||| || |||||||||||||| || |||||| ||||||    
T  5561018 cgatttaaaagaggtaggatcaatttcgtgagttagttaaaatgcaaggac 5561068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 13399835 - 13399940
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||| ||||||||||||        ||||| |||| | || ||| ||||||||||||||||  || ||||| |||||||||||||    
T  13399835 agttggaaatagggagatatgactaaaactgcaaaaaat-atatagtttaaggacaattttgttcgatttaaaagaaata-gaccattttcgtgagttgg 13399932  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  13399933 tcaaaatg 13399940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 2190536 - 2190597
Alignment:
Q  75 tttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    |||||| |||||| |||||||||| ||| ||| | ||||||||||||||| |||| ||||||    
T  2190536 tttagggacgattttgttcgatttgaaaaaggcaggaccaatttcgtgagctggtcaaaatg 2190597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 22445778 - 22445741
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactg 59  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  22445778 tttctgaagttgaaaatagggagatagtactaaaactg 22445741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 60
Target Start/End: Original strand, 63373 - 63404
Alignment:
Q  29 agttggaaatagggagataggactaaaactgc 60  Q
    ||||||||||||| ||||||||||||||||||    
T  63373 agttggaaataggaagataggactaaaactgc 63404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 1e-33; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 34807255 - 34807134
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||| ||||||||||||||||||||       ||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  34807255 tttctggagttggaaatatggagataggactaaaactgcaaaaaaacatatactttagggacgattttgttcgatttaaaagaggtatgaccaatttcgt 34807156  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||| | |||||| ||||||    
T  34807155 gagttgatcaaaatgcaaggac 34807134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 6617051 - 6617183
Alignment:
Q  3 ggttggactaaaactgtcatttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaa 102  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||        ||||| |||||| |||||| | ||||||||||||    
T  6617051 ggttggactaaaactgtcatttctggagttggagatagggagataggactaaaactgcaaaaaaa-atatagtttagggacgattttattcgatttaaaa 6617149  T
Q  103 gaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    |||||| ||||||||||||||||| || ||||||    
T  6617150 gaggtaggaccaatttcgtgagttagtcaaaatg 6617183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 34789797 - 34789911
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       |||||| |||||| || ||| |||||||||||||||||||| |||||||||||||||||||    
T  34789797 agttggaaatagggagataggactaaaactgcaaaaaaacatatagtttagggacaattttgttcgatttaaaagaggtaggaccaatttcgtgagttgg 34789896  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  34789897 tcaaaatgcaaggac 34789911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 54440709 - 54440589
Alignment:
Q  20 catttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttc 119  Q
    |||||||||||||| ||||||||||||||||||||||||||        | ||| |||||| |||||| |||||||||||||||||||| ||||||||||    
T  54440709 catttctgaagttgaaaatagggagataggactaaaactgcaaaaa---acatagtttagggacgattttgttcgatttaaaagaggtaggaccaatttc 54440613  T
Q  120 gtgagttggtaaaaatgtaaggac 143  Q
    |||||||||| |||||| ||||||    
T  54440612 gtgagttggtcaaaatgcaaggac 54440589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 19529001 - 19528887
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       |||||| |||||| |||||| | |||||||||||||||||| |||||||||||||| ||||    
T  19529001 agttggaaatagggagataggactaaaactgcaaaaaaacatatagtttagggacgattttattcgatttaaaagaggtaggaccaatttcgtgaattgg 19528902  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  19528901 tcaaaatgcaaggac 19528887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 33777999 - 33778133
Alignment:
Q  1 gtggttggactaaaactgtcatttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaa 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||       |||||| ||||||||||||| |||| |||||||    
T  33777999 gtggttggactaaaactgtcatttatggagttggaaatagggagatagaactaaaactgc-aaaaaacatataatttaggaacgattttgtttgatttaa 33778097  T
Q  101 aagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    ||||||||  | || ||||||||||| || ||||||    
T  33778098 aagaggtagaatcattttcgtgagttagtcaaaatg 33778133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 24851873 - 24851994
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||  ||||||||||||||||||       |||||| |||||| |||||| |||||||||||||||||||| || |||||||||    
T  24851873 tttctggagttggaaatagaaagataggactaaaactgcaaaaaaacatatagtttagggacgattttgttcgatttaaaagaggtaggatcaatttcgt 24851972  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  24851973 gagttggtcaaaatgcaaggac 24851994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 14439966 - 14439846
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||||| |||||| ||||  |||||||| ||||||||||||||||||    
T  14439966 tttctggagttggaaatagggagataggactaaaactgcaaaaaa-catatagtttagggacgattttgtttaatttaaaaaaggtatgaccaatttcgt 14439868  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  14439867 gagttggtcaaaatgcaaggac 14439846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 12593431 - 12593551
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| ||||||||||||||||||||||||||        ||||| ||||   |||||| |||||||||||||||||||||||||||||||||    
T  12593431 tttctggagttgaaaatagggagataggactaaaactgcaaaaaat-atatagtttacagacgattttgttcgatttaaaagaggtatgaccaatttcgt 12593529  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  12593530 gagttggtcaaaatgcaaggac 12593551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 21034644 - 21034765
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||||||||||||||||||| |||||||||||        ||||| || ||| |||||| ||||||||||||||||| || ||||||||||||    
T  21034644 tttctggagttggaaatagggagatagaactaaaactgcaaaaaaaaatatagttcagggacgattttgttcgatttaaaagagataggaccaatttcgt 21034743  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  21034744 gagttggtcaaaatgcaaggac 21034765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 45838681 - 45838573
Alignment:
Q  26 tgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagt 125  Q
    |||||| ||||||||||||||||||||||||||||       |||||| |||||| |||||| |||||||||||||||||||| |||||||| |||||||    
T  45838681 tgaagtaggaaatagggagataggactaaaactgcaaaaaa-catatagtttagggacgattttgttcgatttaaaagaggtaggaccaattacgtgagt 45838583  T
Q  126 tggtaaaaat 135  Q
    |||| |||||    
T  45838582 tggtcaaaat 45838573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 46737063 - 46737183
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||| ||||| ||||| ||||||||||||       |||||| |||||| |||||| |||||||||||||||||||| ||||||||||||    
T  46737063 tttctggagttggagataggaagatatgactaaaactgcaaaaaa-catatagtttagggacgattttgttcgatttaaaagaggtaggaccaatttcgt 46737161  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  46737162 gagttggtcaaaatgcaaggac 46737183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 55677372 - 55677478
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    |||||||||||||||||||||||||||| ||        |||||| |||||  |||||| |||||||||||||||||||| |||||||||||||||||||    
T  55677372 agttggaaatagggagataggactaaaattgtaaaaaaacatatagtttagagacgattttgttcgatttaaaagaggtaggaccaatttcgtgagttgg 55677471  T
Q  129 taaaaat 135  Q
    | |||||    
T  55677472 tcaaaat 55677478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 33689966 - 33689847
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| ||||||||||||| ||||||||||||       |||||| |||| | |||||| |||||||||||||||||||| ||||||||| ||    
T  33689966 tttctggagttgtaaatagggagatatgactaaaactgcaaaaa--catatagtttaaggacgattttgttcgatttaaaagaggtaggaccaattttgt 33689869  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  33689868 gagttggtcaaaatgcaaggac 33689847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 26974422 - 26974308
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||||||||||||||||||||||||||||||        |||||| |||| | |||||| |||||||||||||| || |||||||| ||||||    
T  26974422 tttctggagttggaaatagggagataggactaaaactgtaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagatatgaccattttcgt 26974323  T
Q  122 gagttggtaaaaatg 136  Q
    ||||| || ||||||    
T  26974322 gagtttgttaaaatg 26974308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 28465219 - 28465099
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| ||||||||||||| ||||||||||||       |||||| |||| | |||||| |||||||||||||||||||| || |||||||||    
T  28465219 tttctggagttgaaaatagggagatatgactaaaactgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaagaggtaggatcaatttcgt 28465121  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
     ||||||| |||||| ||||||    
T  28465120 aagttggtcaaaatggaaggac 28465099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 36168470 - 36168348
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnn--catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttc 119  Q
    |||||| |||| |||||||||||||| ||||||||||||         |||||| |||| | |||||| |||||||||||||||||||| ||||||||||    
T  36168470 tttctggagttagaaatagggagataagactaaaactgcaaaaaaaaacatataatttaaggacgattttgttcgatttaaaagaggtaagaccaatttc 36168371  T
Q  120 gtgagttggtaaaaatgtaagga 142  Q
    ||| |||||| |||||| |||||    
T  36168370 gtgggttggtcaaaatgcaagga 36168348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 56077739 - 56077845
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| || || ||||| |||||||||||||    
T  56077739 agttggaaatagggagataggactaaaactgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaaaagataagaccattttcgtgagttgg 56077837  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  56077838 tcaaaatg 56077845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 34789520 - 34789407
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||| |||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| || || ||||| ||||||    
T  34789520 tttctggagtttgaaatagggagataggactaaaactgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgt 34789422  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  34789421 gagttggtcaaaatg 34789407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 41608509 - 41608392
Alignment:
Q  26 tgaagttggaaatagggagataggactaaaactgcnnnnnnn--catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtga 123  Q
    |||||||||||||| ||||||||||||||||||||         |||||| ||| |  |||||| ||||||||||||||||||||||||||||||| |||    
T  41608509 tgaagttggaaatatggagataggactaaaactgcaaaaaaaaacatatagtttgg--acgattttgttcgatttaaaagaggtatgaccaatttcatga 41608412  T
Q  124 gttggtaaaaatgtaaggac 143  Q
    |||| | |||||| ||||||    
T  41608411 gttgatcaaaatgcaaggac 41608392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 21034367 - 21034260
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||| |||||||||||        |||||| |||| | |||||| |||||||||||||| || || ||||| |||||||||||||    
T  21034367 agttggaaatagggagatatgactaaaactgtaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgtgagttgg 21034268  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  21034267 tcaaaatg 21034260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 32 - 123
Target Start/End: Original strand, 26974662 - 26974753
Alignment:
Q  32 tggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtga 123  Q
    |||||||||| ||||| ||||||||||||       |||||| |||||| || ||| |||||||||||||||||||| ||||||||||||||    
T  26974662 tggaaataggaagatatgactaaaactgcaaaaaaacatatagtttagggacaattttgttcgatttaaaagaggtaggaccaatttcgtga 26974753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 41608870 - 41608936
Alignment:
Q  70 tatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    |||| |||| |||||||| |||| ||||||||||||||| |||||||||||||||||||| ||||||    
T  41608870 tatagtttaagaacgattttgttggatttaaaagaggtaggaccaatttcgtgagttggtcaaaatg 41608936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 12593162 - 12593056
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| |||||||||||||||| ||||| |||       |||||| |||| | |||||| |||||||||||||| ||||||||||| ||||||    
T  12593162 tttctggagttgaaaatagggagataggattaaaattgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaaaaggtatgaccattttcgt 12593064  T
Q  122 gagttggt 129  Q
    ||||||||    
T  12593063 gagttggt 12593056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 28465496 - 28465602
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    |||||||||||||||||||||||||||| |||       |||||| |||| | |||||| |||||||||||||| || || ||||| |||||||||||||    
T  28465496 agttggaaatagggagataggactaaaattgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgtgagttgg 28465594  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  28465595 tcaaaatg 28465602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 54440977 - 54441078
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| || || ||||| ||||||    
T  54440977 tttctggagttggaaatagggagataggactaaaactgc-aaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgt 54441075  T
Q  122 gag 124  Q
    |||    
T  54441076 gag 54441078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 35644042 - 35644090
Alignment:
Q  95 atttaaaagaggtatgaccaatttcgtgagttggtaaaaatgtaaggac 143  Q
    ||||||||||||||||||| ||||||||||||||| |||||| ||||||    
T  35644042 atttaaaagaggtatgacctatttcgtgagttggtcaaaatgcaaggac 35644090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 45838955 - 45839069
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgc--nnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttc 119  Q
    |||||| ||||||||||||| ||||||||||||||||||         |||||| |||| | |||||| |||||||||||||| || || |||| |||||    
T  45838955 tttctggagttggaaataggaagataggactaaaactgcaaaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataggacc-atttc 45839053  T
Q  120 gtgagttggtaaaaat 135  Q
    |||||||||| |||||    
T  45839054 gtgagttggtcaaaat 45839069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 14440243 - 14440349
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||| ||||||||||||       |||||| |||| | | |||| |||||||||||||| || || ||||| |||||| ||||||    
T  14440243 agttggaaatagggagatatgactaaaactgc-aaaaaacatatagtttaaggatgattttgttcgatttaaaaaagataggaccattttcgtaagttgg 14440341  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  14440342 tcaaaatg 14440349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 28166135 - 28166030
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||| ||||||||||||||||||||||||||        ||||| |||| | || ||| |||||||||||||| || || ||||| |||||||||||||    
T  28166135 agttgaaaatagggagataggactaaaactgcaaaaaaa-atatagtttaaggacaattttgttcgatttaaaaaagataggaccattttcgtgagttgg 28166037  T
Q  129 taaaaat 135  Q
    | |||||    
T  28166036 tcaaaat 28166030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 33777791 - 33777657
Alignment:
Q  1 gtggttggactaaaactgtcatttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaa 100  Q
    ||||||||||||||||| |||||| || ||||| |||| | ||||||||| ||||| |||       |||||| |||| | |||||| |||||||||| |    
T  33777791 gtggttggactaaaactctcatttatggagttgaaaatggagagataggattaaaattgc-aaaaaacatatagtttaaggacgattttgttcgatttta 33777693  T
Q  101 aagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    || |  ||||| || |||||||||||||| ||||||    
T  33777692 aaaaaatatgatcattttcgtgagttggtcaaaatg 33777657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 31297163 - 31297203
Alignment:
Q  89 tgttcgatttaaaagaggtatgaccaatttcgtgagttggt 129  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  31297163 tgttcgatttaaaaaaggcatgaccaatttcgtgagttggt 31297203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 40160187 - 40160119
Alignment:
Q  68 catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    |||||| |||||| ||| || |||||||||||||||||| ||||| | ||||||||| |||| ||||||    
T  40160187 catatagtttagggacggttttgttcgatttaaaagaggcatgactattttcgtgagctggttaaaatg 40160119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 60
Target Start/End: Original strand, 34807554 - 34807585
Alignment:
Q  29 agttggaaatagggagataggactaaaactgc 60  Q
    ||||||||||||||||||||||||||||||||    
T  34807554 agttggaaatagggagataggactaaaactgc 34807585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 41114290 - 41114182
Alignment:
Q  29 agttggaaatagggagataggactaaaactgc-nnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttg 127  Q
    ||||||||||||||||||| ||||||||||||        |||||| |||| | ||| || |||||||||||||| || || ||||  ||||||||||||    
T  41114290 agttggaaatagggagatatgactaaaactgcaaaaaaaacatatagtttaaggacgtttttgttcgatttaaaaaagataggacccttttcgtgagttg 41114191  T
Q  128 gtaaaaatg 136  Q
    || ||||||    
T  41114190 gtcaaaatg 41114182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 51309979 - 51310026
Alignment:
Q  89 tgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    |||||||||| ||||||| ||||||| ||||||||| |||||||||||    
T  51309979 tgttcgatttgaaagaggcatgaccattttcgtgagctggtaaaaatg 51310026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 24851603 - 24851565
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgc 60  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  24851603 tttctggagttggaaatagggagataagactaaaactgc 24851565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 30597973 - 30598038
Alignment:
Q  69 atatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaa 134  Q
    ||||| |||||| |||||| |||||||||||||||||  |  ||||||| ||||||||||| ||||    
T  30597973 atataatttagggacgattttgttcgatttaaaagagacagaaccaattccgtgagttggtcaaaa 30598038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 35643968 - 35644004
Alignment:
Q  24 tctgaagttggaaatagggagataggactaaaactgc 60  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  35643968 tctggagttggaaatagggagataagactaaaactgc 35644004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 60
Target Start/End: Complemental strand, 35643698 - 35643667
Alignment:
Q  29 agttggaaatagggagataggactaaaactgc 60  Q
    ||||| ||||||||||||||||||||||||||    
T  35643698 agttgtaaatagggagataggactaaaactgc 35643667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 2e-31; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 5334036 - 5333899
Alignment:
Q  4 gttggactaaaactgtcatttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaag 103  Q
    |||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||       |||||| |||||| |||||| |||||||||||||||    
T  5334036 gttggactaaaactgtcatttctggagtaggaaatagggggatatgactaaaactgcaaaaaa-catatagtttagggacgattttgttcgatttaaaag 5333938  T
Q  104 aggtatgaccaatttcgtgagttggtaaaaatgtaagga 142  Q
    ||||| ||||| |||||||||||||| |||||| |||||    
T  5333937 aggtacgaccattttcgtgagttggtcaaaatgcaagga 5333899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 35161216 - 35161330
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||| ||||||||||||       |||||| |||||| |||||| |||||||||||||||||||| |||||||| ||||||||||    
T  35161216 agttggaaatagggagatatgactaaaactgcaaaaaaacatatagtttagggacgattttgttcgatttaaaagaggtaggaccaattccgtgagttgg 35161315  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  35161316 tcaaaatgcaaggac 35161330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 25637336 - 25637215
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||||||||||||||||||||||||||||| |       |||||| |||||| |||||| |||||||||||||||||||| |||||||||| |    
T  25637336 tttctggagttggaaatagggagataggactaaaactacaaaaaaacatatagtttagggacgattttgttcgatttaaaagaggtaggaccaatttcat 25637237  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| || ||| ||||||    
T  25637236 gagttggtcaatatgcaaggac 25637215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 27245342 - 27245221
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||| ||||||||||||||||||||       |||||  ||| || |||||| |||||||||||||||||||| ||||||||||||    
T  27245342 tttctggagttggaaataaggagataggactaaaactgcaaaaaaacatatggtttggggacgattttgttcgatttaaaagaggtaggaccaatttcgt 27245243  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  27245242 gagttggtcaaaatgcaaggac 27245221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 28687907 - 28688027
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||| |||||||||||||| |||       |||||| |||||| |||||| ||||||||||||||||||||||| |||||||||    
T  28687907 tttctggagttggaaataggaagataggactaaaagtgcaaaaaa-catatagtttagggacgattttgttcgatttaaaagaggtatgatcaatttcgt 28688005  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  28688006 gagttggtcaaaatgcaaggac 28688027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 39388682 - 39388796
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||| ||||||||||||||||||||||||||       |||||| |||||  |||||| |||||||||||||||||||| ||| |||||||||||||||    
T  39388682 agttgaaaatagggagataggactaaaactgcaaaaaaacatatagtttagagacgattttgttcgatttaaaagaggtaggacaaatttcgtgagttgg 39388781  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  39388782 tcaaaatgcaaggac 39388796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 16081714 - 16081827
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       |||||| |||||| | |||| |||||||||||||||||||| || ||||||||||||||||    
T  16081714 agttggaaatagggagataggactaaaactgcaaaaaa-catatagtttagggatgattttgttcgatttaaaagaggtaggatcaatttcgtgagttgg 16081812  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  16081813 tcaaaatgcaaggac 16081827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 26026456 - 26026343
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| ||||||||||||| ||||||||||||       |||||| |||| | |||||| |||||||||||||||||||||||||||||||||    
T  26026456 tttctggagttgaaaatagggagataagactaaaactgcaaaaaaacatatagtttatggacgattttgttcgatttaaaagaggtatgaccaatttcgt 26026357  T
Q  122 gagttggtaaaaat 135  Q
    ||| |||| |||||    
T  26026356 gagctggtcaaaat 26026343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 9181817 - 9181939
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnn--catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttc 119  Q
    |||||| |||||||||||||||||||||||||||||||          |||||| |||||| |||||| ||||||||||||||||||||||| |||||||    
T  9181817 tttctggagttggaaatagggagataggactaaaactggaaaaaaaaacatatagtttagggacgattttgttcgatttaaaagaggtatgatcaatttc 9181916  T
Q  120 gtgagttggtaaaaatgtaagga 142  Q
    |||| ||||| |||||| |||||    
T  9181917 gtgaattggtcaaaatgcaagga 9181939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 786914 - 786801
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       |||||| |||| | |  ||| |||||||||||||| ||||||||||| |||||||||||||    
T  786914 agttggaaatagggagataggactaaaactgcaaaaaaacatatagtttaaggaaaattttgttcgatttaaaaaaggtatgaccattttcgtgagttgg 786815  T
Q  129 taaaaatgtaagga 142  Q
    | |||||| |||||    
T  786814 tcaaaatggaagga 786801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 7732619 - 7732506
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||| ||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||||||||| ||||||||||||||||||     
T  7732619 agttgaaaatagggagataggactaaaactgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaagaggtaggaccaatttcgtgagttga 7732521  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  7732520 tcaaaatgcaaggac 7732506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 24929718 - 24929836
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatac----tttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgag 124  Q
    ||||||||||||||||||||||||||||||||        |||||     |||||| |||||| |||| ||||||||||||||| |||||||||||||||    
T  24929718 agttggaaatagggagataggactaaaactgcaaaaaaaaatatatatagtttagggacgattttgtttgatttaaaagaggtaagaccaatttcgtgag 24929817  T
Q  125 ttggtaaaaatgtaaggac 143  Q
    ||||| |||||| ||||||    
T  24929818 ttggtcaaaatgcaaggac 24929836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 25637606 - 25637719
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| || || ||||| ||||||    
T  25637606 tttctggagttggaaatagggagataggactaaaactgc-aaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgt 25637704  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  25637705 gagttggtcaaaatg 25637719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 48247722 - 48247605
Alignment:
Q  29 agttggaaatagggagataggactaaaactgc---nnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagt 125  Q
    ||||||||||||||||||| ||||||||||||           |||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||||    
T  48247722 agttggaaatagggagatatgactaaaactgcaaaaaaaaaatatatactttagggacgattttgtttgatttaaaagaggtaggaccaatttcgtgagt 48247623  T
Q  126 tggtaaaaatgtaaggac 143  Q
    || | |||||| ||||||    
T  48247622 tgatcaaaatgcaaggac 48247605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 9181670 - 9181557
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||        ||||| |||| | |||||| |||||||||||||| || || ||||| ||||||    
T  9181670 tttctggagttggaaatagggagataggactaaaactgcaaaaaaa-atatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgt 9181572  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  9181571 gagttggtcaaaatg 9181557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 48247999 - 48248113
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||||||||||||||||| |||||||||||||       |||||| |||| | |||||| |||||||||||||| || || ||||| ||| ||    
T  48247999 tttctggagttggaaatagggagatgggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataggaccatttttgt 48248098  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  48248099 gagttggtcaaaatg 48248113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 5745777 - 5745664
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||| ||||||||||||||| ||||||||||||       |||||| |||| ||| |||| |||||||||||||| || |||||||| ||||||    
T  5745777 tttctggagtaggaaatagggagataagactaaaactgcaaaaaa-catatagtttaagaaagattttgttcgatttaaaaaagatatgaccattttcgt 5745679  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  5745678 gagttggtcaaaatg 5745664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 26048353 - 26048465
Alignment:
Q  20 catttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttc 119  Q
    ||||| || ||||||||||||||||||| ||||||||||||       |||||| |||| | || ||| |||| ||||||||||||||| ||||||||||    
T  26048353 catttttggagttggaaatagggagatatgactaaaactgcaaaaa--catatagtttaaggacaattttgtttgatttaaaagaggtaggaccaatttc 26048450  T
Q  120 gtgagttggtaaaaa 134  Q
    |||||||||| ||||    
T  26048451 gtgagttggtcaaaa 26048465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 11973810 - 11973930
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||||||||||||||||| |||||| |||||||||||       ||| || |||||| |||||| ||||| ||||||||||||||  |||||||||||    
T  11973810 tttctgaagttggaaataggaagatagaactaaaactgcaaaaac-catttaatttagggacgattttgttcaatttaaaagaggtagaaccaatttcgt 11973908  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
      |||||| |||||| ||||||    
T  11973909 acgttggtcaaaatgcaaggac 11973930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 5334273 - 5334347
Alignment:
Q  69 atatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatgtaaggac 143  Q
    ||||| |||||| |||||| |||||||||||||||||||| ||| | |||||||||||||| ||||||| |||||    
T  5334273 atatagtttagggacgattttgttcgatttaaaagaggtaggactattttcgtgagttggtcaaaatgtgaggac 5334347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 14311447 - 14311340
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    |||||||||||||||||||||| ||||||||        |||||| |||||| |||||| | ||| ||||||||||||||| ||||||||  ||||||||    
T  14311447 agttggaaatagggagataggattaaaactgtaaaaaaacatatagtttagggacgattttattcaatttaaaagaggtataaccaattttatgagttgg 14311348  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  14311347 ttaaaatg 14311340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 787246 - 787306
Alignment:
Q  75 tttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaat 135  Q
    |||||| |||||| |||||||||||||||||||| ||||| |||||||||||||| |||||    
T  787246 tttagggacgattttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaat 787306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 15712496 - 15712390
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    |||||||||||||||||||||||||||||| |        ||||| |||| | |||||| |||||||||||||| || || ||||| |||||||||||||    
T  15712496 agttggaaatagggagataggactaaaactacaaaaaat-atatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgtgagttgg 15712398  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  15712397 tcaaaatg 15712390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 27245612 - 27245725
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||| |||||||| |||       |||||| |||| | |||||| |||||||||||||| || || ||||| ||||||    
T  27245612 tttctggagttggaaatagggagatatgactaaaattgcaaaata-catataatttaaggacgattttgttcgatttaaaaaagataggaccattttcgt 27245710  T
Q  122 gagttggtaaaaatg 136  Q
    |||||| | ||||||    
T  27245711 gagttgatcaaaatg 27245725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 34595232 - 34595300
Alignment:
Q  75 tttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatgtaaggac 143  Q
    |||||| |||||| |||||||||||||||| | | ||||| |||||||||||||| ||||||| |||||    
T  34595232 tttagggacgattttgttcgatttaaaagatgcaggaccattttcgtgagttggtcaaaatgtgaggac 34595300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 7732893 - 7733008
Alignment:
Q  20 catttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttc 119  Q
    ||||| || ||||| |||||||||||||||||||||| |||       |||||| |||| | |||||| |||||||||||||| || || || || ||||    
T  7732893 catttatggagttgaaaatagggagataggactaaaattgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaaaagataggatcattttc 7732991  T
Q  120 gtgagttggtaaaaatg 136  Q
    |||||||||| ||||||    
T  7732992 gtgagttggtcaaaatg 7733008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 16917790 - 16917738
Alignment:
Q  84 gattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    |||| |||||||||||||| || |||||||| |||||||||||||| ||||||    
T  16917790 gattttgttcgatttaaaaaagatatgaccattttcgtgagttggtcaaaatg 16917738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 2758151 - 2758210
Alignment:
Q  68 catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttg 127  Q
    |||||| |||| | |||||| ||||||||||||||||||||  |||| ||||||||||||    
T  2758151 catatagtttatggacgattttgttcgatttaaaagaggtagaaccattttcgtgagttg 2758210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 5746054 - 5746168
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnn-catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttg 127  Q
    ||||||||||||||||||| |||||||| |||        |||||| |||| | ||| || |||||||||||||||||| | || ||||||||||||||     
T  5746054 agttggaaatagggagataagactaaaattgcaaaaaaaacatatagtttatggacggttttgttcgatttaaaagaggca-gatcaatttcgtgagtta 5746152  T
Q  128 gtaaaaatgtaaggac 143  Q
    || |||||| ||||||    
T  5746153 gtcaaaatgcaaggac 5746168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 14311702 - 14311801
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||| ||||||||||||       |||||| ||||   |||||| |||||||||||||| || || ||||| ||| |||||||||    
T  14311702 agttggaaatagggagataagactaaaactgc-aaaaaacatatagtttaaagacgattttgttcgatttaaaaaagataggaccatttttgtgagttgg 14311800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 11971467 - 11971359
Alignment:
Q  31 ttggaaatagggagataggactaaaactgcnnnnnnn---catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttg 127  Q
    |||||||||||||||||||||||||||||           |||||| |||| | |||||| |||||||||||||| || || ||||| |||||||||| |    
T  11971467 ttggaaatagggagataggactaaaactgtaaaaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgtgagtag 11971368  T
Q  128 gtaaaaatg 136  Q
    || ||||||    
T  11971367 gtcaaaatg 11971359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 16081430 - 16081325
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||| ||||||||||||||||||       || ||| |||| | |||||| |||||||||||||| || || ||||| || | ||||||||    
T  16081430 agttggaaataggtagataggactaaaactgc-aaaaaacaaatagtttaaggacgattttgttcgatttaaaaaagataggaccatttccatgagttgg 16081332  T
Q  129 taaaaat 135  Q
    | |||||    
T  16081331 tcaaaat 16081325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 4477788 - 4477721
Alignment:
Q  75 tttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatgtaagga 142  Q
    |||||| |||||| | ||| ||||||||||||   ||||| |||||||| ||||| ||||||||||||    
T  4477788 tttagggacgattttattcaatttaaaagaggcgggaccattttcgtgaattggtcaaaatgtaagga 4477721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 2e-31; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 5161955 - 5162096
Alignment:
Q  1 gtggttggactaaaactgtcatttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaa 100  Q
    ||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||| |||       |||||| |||||| |||||| ||||||||||||    
T  5161955 gtggttggattaaaaccgtcatttctgaagttgtaaattgggagataggactaaaattgcaaaaaaacatataatttagggacgattttgttcgatttaa 5162054  T
Q  101 aagaggtatgaccaatttcgtgagttggtaaaaatgtaagga 142  Q
    |||||||||||| ||| || ||||||||| |||||| |||||    
T  5162055 aagaggtatgactaatctcatgagttggtcaaaatgcaagga 5162096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 28289822 - 28289703
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||||||||||||||||||||||||||||||        |||||| |||||| |||||| |||||||||||||||||||||||| ||||||||    
T  28289822 tttctggagttggaaatagggagataggactaaaactg-gaaaaaacatataatttagggacgattttgttcgatttaaaagaggtatgactaatttcgt 28289724  T
Q  122 gagttggtaaaaatgtaagga 142  Q
    |||||||| |||||| |||||    
T  28289723 gagttggtcaaaatgcaagga 28289703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 18150131 - 18150244
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||||| | |||| |||||||||||||||||||| ||||||||||||    
T  18150131 tttctggagttggaaatagggagataggactaaaactgcaaaaaaacatatagtttagggatgattttgttcgatttaaaagaggtaggaccaatttcgt 18150230  T
Q  122 gagttggtaaaaat 135  Q
    ||||| || |||||    
T  18150231 gagtttgtcaaaat 18150244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 18149892 - 18149765
Alignment:
Q  1 gtggttggactaaaactgtcatttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaa 100  Q
    |||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||       |||||| |||| | |||||| ||||||||||||    
T  18149892 gtggttagactaaaactgtcatttatggagttggaaatagggaaataggactaaaactgc-aaaaaacatatagtttaaggacgattttgttcgatttaa 18149794  T
Q  101 aagaggtatgaccaatttcgtgagttggt 129  Q
    || || || ||||| ||||||||||||||    
T  18149793 aaaagataggaccattttcgtgagttggt 18149765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 38900775 - 38900669
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       |||||| |||||| |||||| |||||||||||||||||||| || || |||||||||||||    
T  38900775 agttggaaatagggagataggactaaaactgcaaaaaa-catataatttagggacgattttgttcgatttaaaagaggtaggatcattttcgtgagttgg 38900677  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  38900676 tcaaaatg 38900669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 32697679 - 32697747
Alignment:
Q  68 catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  32697679 catatagtttagggacgattctgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatg 32697747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 21371104 - 21371223
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||||||||||||||||||||||||||| |||       |||||| |||||| |||||| |||| ||||||||||||||| |||||||||  |    
T  21371104 tttctggagttggaaatagggagataggactaaaattgcaaaaaa-catatagtttagggacgattttgtttgatttaaaagaggtaggaccaattttat 21371202  T
Q  122 gagttggtaaaaatgtaagga 142  Q
    |||||||| |||||| |||||    
T  21371203 gagttggtcaaaatgcaagga 21371223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 4967184 - 4967299
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnn-catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttg 127  Q
    |||| |||||||||| ||||||||||||||||        |||||| |||||| |||||| |||||||||||||||||||| ||||| ||| ||||||||    
T  4967184 agttagaaatagggatataggactaaaactgcaaaaaaaacatatagtttagggacgattttgttcgatttaaaagaggtaagaccatttttgtgagttg 4967283  T
Q  128 gtaaaaatgtaaggac 143  Q
    || ||||||| |||||    
T  4967284 gtcaaaatgtgaggac 4967299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 15115510 - 15115619
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    |||||||||||||| |||| ||||||||||||        ||||| |||| | |||||| |||||||||||||||||||| ||||| |||||||||||||    
T  15115510 agttggaaatagggcgatatgactaaaactgcaaaa----atatagtttaaggacgattttgttcgatttaaaagaggtaggaccattttcgtgagttgg 15115605  T
Q  129 taaaaatgtaagga 142  Q
    | ||||||| ||||    
T  15115606 tcaaaatgtgagga 15115619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 28290052 - 28290165
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| ||||||||||||||  | || ||||| ||||||    
T  28290052 tttctggagttggaaatagggagataggactaaaactgc-aaaaaacatatagtttaaggacgattttgttcgatttaaaaatgataggaccattttcgt 28290150  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  28290151 gagttggtcaaaatg 28290165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 14340864 - 14340931
Alignment:
Q  69 atatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    ||||| |||| | |||||| |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  14340864 atatagtttatggacgattttgttcgatttaaaagatgtatgaccaatttcgtgagttggtcaaaatg 14340931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 15029717 - 15029830
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||| ||||||||||||| | |||||||||||       |||||| |||| | |||||| |||||||||||||| ||||| ||||| ||||||    
T  15029717 tttctggagtttgaaatagggagatcgaactaaaactgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaaaaggtaagaccattttcgt 15029815  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  15029816 gagttggtcaaaatg 15029830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 8419029 - 8419141
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||        ||||| |||| | |||||| ||||| |||||||| || || |||||  |||||    
T  8419029 tttctggagttggaaatagggagataggactaaaactgcaaaaaa--atatagtttaaggacgattttgttcaatttaaaaaagataggaccatattcgt 8419126  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  8419127 gagttggtcaaaatg 8419141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 4966955 - 4966841
Alignment:
Q  20 catttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttc 119  Q
    |||||||  |||||||||||||| |||| ||||||||||||       |||||| |||||| |||||| |||||||||||||||||| |  || | ||||    
T  4966955 catttctagagttggaaataggg-gatatgactaaaactgctaaaaa-catatagtttagggacgattttgttcgatttaaaagaggcagtactattttc 4966858  T
Q  120 gtgagttggtaaaaatg 136  Q
    |||||||||| ||||||    
T  4966857 gtgagttggtcaaaatg 4966841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 19291488 - 19291390
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttg 127  Q
    ||||||||||| ||||||| ||||||||||||       |||||| |||| | |||||| |||||||||||||| || || ||||| ||| ||||||||    
T  19291488 agttggaaataaggagataagactaaaactgcaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataggaccatttttgtgagttg 19291390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 21370832 - 21370798
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaa 56  Q
    |||||| ||||||||||||||||||||||||||||    
T  21370832 tttctggagttggaaatagggagataggactaaaa 21370798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 39083498 - 39083383
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnnc-atatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcg 120  Q
    |||||| ||||||||||| ||||||| ||||||||||||         ||||| |||| |||| ||| |||||||||||||| |  || ||||| |||||    
T  39083498 tttctggagttggaaatatggagatatgactaaaactgcaaaaaatatatatagtttaagaacaattttgttcgatttaaaaaaaataggaccattttcg 39083399  T
Q  121 tgagttggtaaaaatg 136  Q
    ||||||||| ||||||    
T  39083398 tgagttggtcaaaatg 39083383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 4e-30; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 46013560 - 46013441
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| ||||||||||||| ||||||||||||       ||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  46013560 tttctggagttgaaaatagggagatatgactaaaactgcaaaaaa-catatactttagggacgattttgttcgatttaaaagaggtatgaccaatttcgt 46013462  T
Q  122 gagttggtaaaaatgtaagga 142  Q
    |||||||| |||||| |||||    
T  46013461 gagttggtcaaaatgcaagga 46013441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 49720748 - 49720881
Alignment:
Q  1 gtggttggactaaaactgtcatttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaa 100  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||       |||||| |||| | |||||| ||||||||||||    
T  49720748 gtggttggaccaaaactgtcatttctggagttggaaatagggagataagactaaaactgc-aaaaaacatatagtttaaggacgattttgttcgatttaa 49720846  T
Q  101 aagaggtatgaccaatttcgtgagttggtaaaaat 135  Q
    || || |||||||| |||||||||||||| |||||    
T  49720847 aaaagatatgaccattttcgtgagttggtcaaaat 49720881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 330005 - 329871
Alignment:
Q  1 gtggttggactaaaactgtcatttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaa 100  Q
    |||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||       |||||| |||| | |||||| ||||||||||||    
T  330005 gtggttggactaaaactgtcatttatggagttggaaacagggagataggactaaaactgc-aaaaaacatatagtttaaggacgattttgttcgatttaa 329907  T
Q  101 aagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    || || || ||||| |||||||||||||| ||||||    
T  329906 aaaagttaggaccattttcgtgagttggtcaaaatg 329871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 51828678 - 51828557
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||||||||| ||||||||||||    
T  51828678 tttctggagttggaaatagggagataggactaaaactgcaaaaaaacatatagtttacggacgattttgttcgatttaaaagaggtaagaccaatttcgt 51828579  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
     | ||||| |||||| ||||||    
T  51828578 aatttggtcaaaatgcaaggac 51828557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 49720509 - 49720390
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||| |||||| ||||||||||||||||||||       | ||||||||||| |||||| |||||||||||||||||||| ||||||||||||    
T  49720509 tttctggagttagaaataaggagataggactaaaactgcaaaaaa-cgtatactttagggacgattttgttcgatttaaaagaggtaggaccaatttcgt 49720411  T
Q  122 gagttggtaaaaatgtaagga 142  Q
    |||||||| |||||| |||||    
T  49720410 gagttggtcaaaatgcaagga 49720390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 47431835 - 47431721
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||| |||||||||||||||||||||||||||       |||||| ||||   |||||| |||||||||||||||||||||||||| ||||||    
T  47431835 tttctggagttagaaatagggagataggactaaaactgcaaaaaaacatatagtttaaagacgattttgttcgatttaaaagaggtatgaccattttcgt 47431736  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  47431735 gagttggtcaaaatg 47431721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 52237232 - 52237345
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    |||| |||||||||||||||||||||||||||       |||||| |||||| |||||| |||||||||||||||||||| ||||| |||||||||||||    
T  52237232 agttagaaatagggagataggactaaaactgcaaaaaa-catataatttagggacgattttgttcgatttaaaagaggtaggaccattttcgtgagttgg 52237330  T
Q  129 taaaaatgtaaggac 143  Q
    | ||||||| |||||    
T  52237331 tcaaaatgtgaggac 52237345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 40839060 - 40839180
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||| |||||||||||||||||||||||||||       |||||| |||||| |||||| |||||||||||||||||||| ||||| ||||||    
T  40839060 tttctggagttagaaatagggagataggactaaaactgcaaaaaa-catatagtttagggacgattttgttcgatttaaaagaggtaagaccattttcgt 40839158  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    ||||| || ||||||| |||||    
T  40839159 gagtttgtcaaaatgtgaggac 40839180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 51828095 - 51827975
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| |||||||||||||||||||||| |||       |||||| |||||| |||||| ||||||||||||||||| || ||||||||||||    
T  51828095 tttctggagttgaaaatagggagataggactaaaaatgcaaaaaa-catatagtttagggacgattttgttcgatttaaaagagctaggaccaatttcgt 51827997  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  51827996 gagttggtcaaaatgcaaggac 51827975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 16689497 - 16689383
Alignment:
Q  21 atttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcg 120  Q
    ||||||| ||| |||||||||| |||||||||||||||||       |||||| |||| | |||||| |||||||||||||||||||| |||||||||||    
T  16689497 atttctggagtcggaaatagggtgataggactaaaactgcaaaaaa-catatattttatggacgattttgttcgatttaaaagaggtaggaccaatttcg 16689399  T
Q  121 tgagttggtaaaaatg 136  Q
    ||||||||| ||||||    
T  16689398 tgagttggtcaaaatg 16689383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 52375465 - 52375345
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||| ||||||||||||||| |||||||||||       |||||| |||||| |||||| ||||| |||||||||||||||||||| ||||||    
T  52375465 tttctggagttagaaatagggagatagaactaaaactgcaaaaaa-catatagtttagggacgattttgttcaatttaaaagaggtatgaccattttcgt 52375367  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    || ||||| ||||||| |||||    
T  52375366 gaattggttaaaatgtgaggac 52375345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 51473270 - 51473377
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| || || ||||| |||||||||||||    
T  51473270 agttggaaatagggagataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgtgagttgg 51473369  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  51473370 tcaaaatg 51473377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 34105056 - 34105178
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnn-catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcg 120  Q
    |||||||||||||||||| |||||| |||||||||||||        |||||| |||||| |||||| |||||||||||||||||| | |||||| ||||    
T  34105056 tttctgaagttggaaataaggagatgggactaaaactgcaaaaaaaacatatagtttagggacgattttgttcgatttaaaagagggaggaccaacttcg 34105155  T
Q  121 tgagttggtaaaaatgtaaggac 143  Q
    | ||||||| |||||| ||||||    
T  34105156 taagttggtcaaaatgcaaggac 34105178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 55389743 - 55389637
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| ||||| ||||| ||||||    
T  55389743 tttctggagttggaaatagggagataggactaaaactgc-aaaaaacatatagtttaaggacgattttgttcgatttaaaaaaggtaggaccattttcgt 55389645  T
Q  122 gagttggt 129  Q
    ||||||||    
T  55389644 gagttggt 55389637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 40838790 - 40838677
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||||||||||||| |||| ||||||||||||       |||||| |||| | |||||| |||| ||||||||||||||||||||| ||||||    
T  40838790 tttctggagttggaaatagggggatatgactaaaactgcaaaaaa-catatagtttatggacgattttgtttgatttaaaagaggtatgaccattttcgt 40838692  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  40838691 gagttggtcaaaatg 40838677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 44676603 - 44676490
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||| ||||       |||||| |||||| ||| || ||||||||||||||||||||||| ||||||| |||||| |    
T  44676603 agttggaaatagggagataggactaaagctgcaaaaaa-catatagtttagggacggttttgttcgatttaaaagaggtatgatcaatttcatgagtttg 44676505  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  44676504 tcaaaatgcaaggac 44676490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 51472986 - 51472873
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||| || ||| |||| ||||||||||||||| ||  |||||| ||||||||    
T  51472986 agttggaaatagggagataggactaaaactgcaaaaaa-catatactttagggacaattttgtttgatttaaaagaggtaggaaaaatttcatgagttgg 51472888  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  51472887 tcaaaatgcaaggac 51472873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 40275502 - 40275621
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||||||||||||| |||| ||||||||||||       |||||| |||||  |||||| |||||||||||||||||||| |||| |||||||    
T  40275502 tttctggagttggaaatagggggatatgactaaaactgcaaaaaa-catatagtttagagacgattttgttcgatttaaaagaggtaggacc-atttcgt 40275599  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| ||||||| |||||    
T  40275600 gagttggtcaaaatgtgaggac 40275621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 49951954 - 49952074
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| ||||||||||||| ||||||||||||       ||| || ||||   |||||| |||||||||||||||||||| ||||||||||||    
T  49951954 tttctggagttgaaaatagggagatatgactaaaactgcaaaaaa-catgtagtttaatgacgattttgttcgatttaaaagaggtaagaccaatttcgt 49952052  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  49952053 gagttggtcaaaatgcaaggac 49952074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 2044402 - 2044296
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||| |||||||||| |       |||||| |||| | |||||| |||||||||||||||||||||||||| |||| ||||||||    
T  2044402 agttggaaatagggagatatgactaaaact-ccaaaaaacatataatttatggacgattttgttcgatttaaaagaggtatgaccattttcatgagttgg 2044304  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  2044303 tcaaaatg 2044296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 51828365 - 51828472
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| | || ||| |||||||||||||| |  |||||||| ||||||    
T  51828365 tttctggagttggaaatagggagataggactaaaactgcaaaaaaacatatagtttaaggacaattttgttcgatttaaaaaatatatgaccattttcgt 51828464  T
Q  122 gagttggt 129  Q
    ||||||||    
T  51828465 gagttggt 51828472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 330251 - 330357
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||| ||||||||||||       |||||| |||||| |||||| |||| ||||||||| ||||| ||||| |||||||||||||    
T  330251 agttggaaatagggagatatgactaaaactgcaaaaaa-catatagtttagggacgattttgtttgatttaaaaaaggtaggaccattttcgtgagttgg 330349  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  330350 tcaaaatg 330357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 22370735 - 22370621
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||| ||| ||||||||||||||||||||       |||||| |||||| |||||| |||| | ||||||| ||||| ||||| ||||||    
T  22370735 tttctggagttggagataaggagataggactaaaactgcaaaaaaacatatagtttagggacgattttgtttggtttaaaaaaggtaggaccattttcgt 22370636  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  22370635 gagttggtcaaaatg 22370621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 25535029 - 25534915
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatacttta-ggaacgattctgttcgatttaaaagaggtatgaccaatttcg 120  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| || |||||| |||||||||||||||||||| ||||| ||||     
T  25535029 tttctggagttggaaatagggagataggactaaaactgc-aaaaaacatataatttaggggacgattttgttcgatttaaaagaggtaggaccattttca 25534931  T
Q  121 tgagttggtaaaaatg 136  Q
    ||| ||||| ||||||    
T  25534930 tgaattggtcaaaatg 25534915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 40275233 - 40275111
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnn-catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcg 120  Q
    |||||| |||| |||||| ||||||||||||||||||||        |||| | |||||| || ||| |||||||||||||||||||| ||||| |||||    
T  40275233 tttctggagttagaaatatggagataggactaaaactgcaaaaaaaacatagagtttagggacaattttgttcgatttaaaagaggtaggaccattttcg 40275134  T
Q  121 tgagttggtaaaaatgtaaggac 143  Q
    ||||||||| ||||||| |||||    
T  40275133 tgagttggtcaaaatgtgaggac 40275111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 41998644 - 41998756
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||| |||||||||| |||||||||||||||       |||||| || ||| |||||| |||||||||||||||||||| |||||||||||| ||||||    
T  41998644 agttgaaaatagggag-taggactaaaactgcaaaaaaacatatagtt-agggacgattttgttcgatttaaaagaggtaggaccaatttcgtaagttgg 41998741  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  41998742 tcaaaatgcaaggac 41998756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 14654599 - 14654717
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||| ||||||||||||||||||||        | ||| |||| | |||||| ||||||||||||||||||||   ||||||||||    
T  14654599 tttctggagttggaaataaggagataggactaaaactgcaaaaa---acatagtttacggacgattttgttcgatttaaaagaggtagagccaatttcgt 14654695  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  14654696 gagttggtcaaaatgcaaggac 14654717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 32730520 - 32730407
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||| || |||||||||       |||||| |||||| |||||| ||||| |||||||||||||| ||||||||||  |||||||    
T  32730520 agttggaaatagggagatacgattaaaactgcaaaaaa-catatagtttagggacgattttgttcaatttaaaagaggtaggaccaatttcaagagttgg 32730422  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  32730421 tcaaaatgcaaggac 32730407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 38535703 - 38535816
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||||| |||||| | ||||||||||||||| |  ||| ||||||||    
T  38535703 tttctggagttggaaatagggagataggactaaaactgc-aaaaaacatatagtttagggacgattttattcgatttaaaagagatcggactaatttcgt 38535801  T
Q  122 gagttggtaaaaatg 136  Q
     ||||||| ||||||    
T  38535802 aagttggtcaaaatg 38535816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 52236954 - 52236841
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| |||||||| |||| ||||||||||||       |||||| |||||| |||||| |||||||||||||||||||||||||| ||||||    
T  52236954 tttctggagttgaaaatagggggatatgactaaaactgcaaaaaa-catatagtttagggacgattttgttcgatttaaaagaggtatgaccattttcgt 52236856  T
Q  122 gagttggtaaaaatg 136  Q
    || ||| | ||||||    
T  52236855 gaattgttcaaaatg 52236841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 43678432 - 43678320
Alignment:
Q  23 ttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtg 122  Q
    ||||| ||||||||||||||||||| ||||||||||||       |||||| |||| | |||||| |||||||||||||| || ||||||||  ||||||    
T  43678432 ttctggagttggaaatagggagataagactaaaactgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaaaagatatgaccatgttcgtg 43678334  T
Q  123 agttggtaaaaatg 136  Q
    ||||||| ||||||    
T  43678333 agttggtcaaaatg 43678320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 41998361 - 41998254
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||| ||||||||||||       |||||| |||| | |||||| |||||||||||||| || || ||||| ||||| |||||||    
T  41998361 agttggaaatagggagatatgactaaaactgcaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgcgagttgg 41998262  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  41998261 tcaaaatg 41998254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 46013830 - 46013944
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| || ||  |||| ||| |     
T  46013830 tttctggagttggaaatagggagataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagatagaaccatttttgg 46013929  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  46013930 gagttggtcaaaatg 46013944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 49951677 - 49951571
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    |||||||||||||||||||||||||||| |||       |||||| |||| | |||||| |||||||||||||| || || ||||| |||||||||||||    
T  49951677 agttggaaatagggagataggactaaaattgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgtgagttgg 49951579  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  49951578 tcaaaatg 49951571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 39010161 - 39010093
Alignment:
Q  75 tttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatgtaaggac 143  Q
    |||| |||| ||| ||||||||||||||||||||||| |||||| |||||||||| |||||| ||||||    
T  39010161 tttaagaacaattttgttcgatttaaaagaggtatgagcaattttgtgagttggtcaaaatgcaaggac 39010093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 44676880 - 44676993
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| |||||| ||||||||||||||| |||       |||||| |||| | |||||| |||||||||||||| || |||||||| ||||||    
T  44676880 tttctggagttgaaaatagagagataggactaaaattgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaaaagatatgaccattttcgt 44676978  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  44676979 gagttggtcaaaatg 44676993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 52375739 - 52375852
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||  ||| ||||||||||||       |||||| |||| | |||||| ||||| |||||||||||||| ||||| ||||||    
T  52375739 tttctggagttggaaataggggaatatgactaaaactgcaaaaaa-catatagtttatggacgattttgttcaatttaaaagaggtaggaccattttcgt 52375837  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  52375838 gagttggtcaaaatg 52375852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 16701204 - 16701313
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnn--catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagtt 126  Q
    ||||||||||||||||||| ||||||||||||         |||||| |||| | |||||| ||||||| |||||| || |||||||| |||||||||||    
T  16701204 agttggaaatagggagatatgactaaaactgcaaaaaaaaacatatagtttaaggacgattttgttcgaattaaaaaagatatgaccattttcgtgagtt 16701303  T
Q  127 ggtaaaaatg 136  Q
    ||| ||||||    
T  16701304 ggtcaaaatg 16701313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 38535440 - 38535334
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    |||||||||||||||||||||||| |||||||       |||||| |||| | |||||| |||||||||||||| || || ||||| |||| ||||||||    
T  38535440 agttggaaatagggagataggactgaaactgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcctgagttgg 38535342  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  38535341 tcaaaatg 38535334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 2051388 - 2051320
Alignment:
Q  68 catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    |||||| |||| |||||||| |||||||||||||| || || ||||| |||||||||||||| ||||||    
T  2051388 catatagtttaagaacgattttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatg 2051320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 30513860 - 30513740
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    ||||||||||| |||||| ||||||| ||||||||||||       |||||| |||| | |||||| | |||||||||||| || || ||||| ||||||    
T  30513860 tttctgaagttcgaaatatggagatatgactaaaactgcagaaaaacatatagtttaag-acgattttattcgatttaaaaaagataggaccattttcgt 30513762  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    ||||| || |||||| ||||||    
T  30513761 gagtttgtcaaaatgcaaggac 30513740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 43678699 - 43678812
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||| ||||| |||| |||||||       |||||| |||| | |||||| |||||||||||||||||||  |||||| |||||||||||     
T  43678699 agttggaaataggaagatatgactgaaactgcaaaaaa-catatagtttatggacgattttgttcgatttaaaagaggttggaccaagttcgtgagttga 43678797  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  43678798 tcaaaatgcaaggac 43678812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 50662820 - 50662933
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| |||||||||| |||||||||||||||       |||||| |||| | |||||| |||||||||||||| || |||||| | ||||||    
T  50662820 tttctggagttgaaaatagggagctaggactaaaactgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaaaagatatgactattttcgt 50662918  T
Q  122 gagttggtaaaaatg 136  Q
    ||||| || ||||||    
T  50662919 gagtttgtcaaaatg 50662933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 51828952 - 51829052
Alignment:
Q  26 tgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagt 125  Q
    |||||||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||| || |||||| || || ||||| ||||||||||    
T  51828952 tgaagttggaaatagggagataggactaaaactgc-aaaaaacatatagtttaaggacgattttgtttgaattaaaaaagatacgaccattttcgtgagt 51829050  T
Q  126 tg 127  Q
    ||    
T  51829051 tg 51829052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 43222483 - 43222414
Alignment:
Q  68 catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatgt 137  Q
    |||||| |||||| |||||| |||||||||||||||||  || || | |||||||||||||| |||||||    
T  43222483 catatagtttagggacgattttgttcgatttaaaagagacataactattttcgtgagttggtcaaaatgt 43222414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 43222850 - 43222897
Alignment:
Q  75 tttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtg 122  Q
    |||||| |||||| |||||||||||||||||| ||||||| |||||||    
T  43222850 tttagggacgattttgttcgatttaaaagaggcatgaccattttcgtg 43222897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 14654278 - 14654224
Alignment:
Q  82 acgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    |||||| |||||||||||||| || || ||||| |||||||||||||| ||||||    
T  14654278 acgattttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatg 14654224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 37847226 - 37847265
Alignment:
Q  20 catttctgaagttggaaatagggagataggactaaaactgc 60  Q
    |||||||||||||| ||||||| ||||||||||||||||||    
T  37847226 catttctgaagttgaaaatagg-agataggactaaaactgc 37847265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 40490745 - 40490792
Alignment:
Q  89 tgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    |||||||||||||| | |||||| ||||||||||| ||||| ||||||    
T  40490745 tgttcgatttaaaaaatgtatgatcaatttcgtgaattggtcaaaatg 40490792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 2e-28; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 31073550 - 31073670
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||||| || ||| |||||||||||||||||||||||||||||||||    
T  31073550 tttctggagttggaaatagggagataggactaaaactgcacaaaa-catatagtttagggacaattttgttcgatttaaaagaggtatgaccaatttcgt 31073648  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    ||| |||| |||||| ||||||    
T  31073649 gagctggtcaaaatgcaaggac 31073670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 25468976 - 25468867
Alignment:
Q  35 aaatagggagataggactaaaactgcnnnnnnn-catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaa 133  Q
    ||||||||||||||||||||||||||        |||||| |||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| |||    
T  25468976 aaatagggagataggactaaaactgcaagaaaaacatatagtttagggacgattttgttcgatttaaaagagatatgaccaatttcgtgagttggtcaaa 25468877  T
Q  134 atgtaaggac 143  Q
    ||||||||||    
T  25468876 atgtaaggac 25468867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 31574133 - 31574253
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| ||||||||||||| ||||||||||||       |||||| |||||| |||||| |||||||||||||||||||||||| ||||||||    
T  31574133 tttctggagttgaaaatagggagatatgactaaaactgcaaaaaa-catatagtttagggacgattttgttcgatttaaaagaggtatgactaatttcgt 31574231  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  31574232 gagttggtcaaaatgcaaggac 31574253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 28636431 - 28636318
Alignment:
Q  20 catttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttc 119  Q
    ||||| || ||||||||||||||||||| ||||||||||||       |||||| ||||||||||||| |||||||||||||||| ||| ||||||||||    
T  28636431 catttatggagttggaaatagggagatatgactaaaactgcaaaaa--catatagtttaggaacgattttgttcgatttaaaagaagtaagaccaatttc 28636334  T
Q  120 gtgagttggtaaaaat 135  Q
    |||||||||| |||||    
T  28636333 gtgagttggtcaaaat 28636318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 5120884 - 5120997
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       |||||| |||||| |||||| |||||||||||||||||||| ||  |||||||||||||||    
T  5120884 agttggaaatagggagataggactaaaactgcaaaaaa-catatagtttagggacgattttgttcgatttaaaagaggtaggaataatttcgtgagttgg 5120982  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||| ||||||    
T  5120983 tcaaaatgcaaggac 5120997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 25472420 - 25472534
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| || |||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| || || ||||| ||||||    
T  25472420 tttctggagctggaaatagggagataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataagaccattttcgt 25472519  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  25472520 gagttggtcaaaatg 25472534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 5114606 - 5114493
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| || || ||||| ||||||    
T  5114606 tttctggagttggaaatagggagataggactaaaactgc-aaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgt 5114508  T
Q  122 gagttggtaaaaatg 136  Q
    |||||| | ||||||    
T  5114507 gagttgatcaaaatg 5114493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31073309 - 31073250
Alignment:
Q  1 gtggttggactaaaactgtcatttctgaagttggaaatagggagataggactaaaactgc 60  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||||| ||||||||||||    
T  31073309 gtggttggactaaaactgtcgtttctggagttggaaataggaagatatgactaaaactgc 31073250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 29891218 - 29891099
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||||||||||||||||||| | ||||| ||        |||||| |||||| ||| || |||||| |||||||||||||||| |||||||||    
T  29891218 tttctggagttggaaatagggagatagaattaaaattg-taaaaaacatatagtttagggacgcttttgttcggtttaaaagaggtatgatcaatttcgt 29891120  T
Q  122 gagttggtaaaaatgtaagga 142  Q
     |||| || ||||||||||||    
T  29891119 aagttagtcaaaatgtaagga 29891099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 24640600 - 24640706
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||| ||||||||||||       |||||| |||| | |||||| |||||||||||||| || || ||||| ||||||||||||     
T  24640600 agttggaaatagggagataagactaaaactgcaaaaaa-catatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgtgagttga 24640698  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  24640699 tcaaaatg 24640706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 30251099 - 30251212
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||| |||||||||| |       || ||| |||| | |||||| |||||||||||||| || |||||| | ||| ||    
T  30251099 tttctggagttggaaatagggagataagactaaaactacaaaaatacaaatagtttaaggacgattttgttcgatttaaaaaagatatgacaatttttgt 30251198  T
Q  122 gagttggtaaaaat 135  Q
    |||||||| |||||    
T  30251199 gagttggtcaaaat 30251212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 29891488 - 29891526
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgc 60  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  29891488 tttctggagttggaaatagggagataggactaaaactgc 29891526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 31573863 - 31573825
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgc 60  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  31573863 tttctggagttggaaatagggagataggactaaaactgc 31573825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 28636604 - 28636642
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgc 60  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  28636604 tttctggagttggaaatagggagataagactaaaactgc 28636642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 2e-28; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 443968 - 444072
Alignment:
Q  31 ttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggta 130  Q
    ||||||||||||||||||||||||||||||       |||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||     
T  443968 ttggaaatagggagataggactaaaactgcaaaaaa-catatagtttaggaacgattttgttcgatttaaaagaggtatgacaaatttcgtgagttggtc 444066  T
Q  131 aaaatg 136  Q
    ||||||    
T  444067 aaaatg 444072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 16298813 - 16298702
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||| ||||||||||||||||||       |||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  16298813 agttggaaataggtagataggactaaaactgcaaaaaa-catatagtttagggacgattttgttcgatttaaaagaggtatgaccaatttcgtgagttgg 16298715  T
Q  129 taaaaatgtaagg 141  Q
    | |||||| ||||    
T  16298714 tcaaaatgcaagg 16298702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 10278687 - 10278566
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| |||| |||||||||||||||||||||       |||||| |||||| |||||| |||||||||||||||||||| || |||||||||    
T  10278687 tttctggagttgcaaatggggagataggactaaaactgcaaaaaaacatatagtttagggacgattttgttcgatttaaaagaggtaggatcaatttcgt 10278588  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||||| |||||| ||||||    
T  10278587 gagttggtcaaaatgcaaggac 10278566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 29439056 - 29438948
Alignment:
Q  35 aaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaa 134  Q
    |||||| |||||||||||||||||||       ||| || |||||| |||||| |||||||||||||||||||| |||||||||||||||||||| ||||    
T  29439056 aaatagagagataggactaaaactgcaaaaaaacatttagtttagggacgattttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaa 29438957  T
Q  135 tgtaaggac 143  Q
    || ||||||    
T  29438956 tgcaaggac 29438948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 30786903 - 30786796
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaa-tttcgtgagttg 127  Q
    ||||||||||||||||||||||||||||||||       |||||| |||||| |||||| |||||||||||||||||||| |||||| ||||||||||||    
T  30786903 agttggaaatagggagataggactaaaactgcaaaaaa-catatagtttagggacgattttgttcgatttaaaagaggtaggaccaattttcgtgagttg 30786805  T
Q  128 gtaaaaatg 136  Q
    || ||||||    
T  30786804 gtcaaaatg 30786796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 52335918 - 52336031
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||| ||||||||||||        ||||| |||||| |||||| |||||||||||||||||||| |||||||||| |    
T  52335918 tttctggagttggaaatagggagatatgactaaaactgcaaaaaaa-atatagtttagggacgattttgttcgatttaaaagaggtaggaccaatttcat 52336016  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  52336017 gagttggtcaaaatg 52336031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 17641772 - 17641890
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncata----tactttaggaacgattctgttcgatttaaaagaggtatgaccaatt 117  Q
    |||||| ||||||||||||||||||||||||||||||||        |||    || |||||| |||||| |||||||||||||||||||||||||| ||    
T  17641772 tttctggagttggaaatagggagataggactaaaactgcaaaaaaaaataaaaatagtttagggacgattttgttcgatttaaaagaggtatgaccattt 17641871  T
Q  118 tcgtgagttggtaaaaatg 136  Q
    |||||||||||| ||||||    
T  17641872 tcgtgagttggtcaaaatg 17641890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 34555519 - 34555397
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnn-catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcg 120  Q
    |||||| |||||||||||||||||||||||||||||||         |||||| |||||| |||||| ||||||||||||||||||||  ||||||||||    
T  34555519 tttctggagttggaaatagggagataggactaaaactgtaaaaaaaacatatagtttagggacgattttgttcgatttaaaagaggtagcaccaatttcg 34555420  T
Q  121 tgagttggtaaaaatgtaaggac 143  Q
     ||||| || |||||| ||||||    
T  34555419 cgagttagtcaaaatgcaaggac 34555397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 44582188 - 44582075
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||| |  |||||||||||||||||||       |||||| |||||  |||||| |||||||||||||||||||| |||||||||||| ||||||    
T  44582188 agttggaaacaaagagataggactaaaactgcaaaaaa-catataatttagagacgattttgttcgatttaaaagaggtaggaccaatttcgttagttgg 44582090  T
Q  129 taaaaatgtaaggac 143  Q
    | |||||||||||||    
T  44582089 tcaaaatgtaaggac 44582075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 1837643 - 1837523
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| ||||||||||||| ||||||||||||       |||||| |||||| || ||| ||||||||||||||||| ||||| |||||||||    
T  1837643 tttctggagttgaaaatagggagatatgactaaaactgcaaaaaa-catatagtttagggacaattttgttcgatttaaaagagatatgatcaatttcgt 1837545  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    |||||| | |||||| ||||||    
T  1837544 gagttgatcaaaatgcaaggac 1837523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 37421293 - 37421185
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnn-catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttg 127  Q
    ||||||||||||||| ||| ||||||||||||        |||||| |||||| |||||| |||||||||||||||||||| |||||||||||||| |||    
T  37421293 agttggaaatagggaaatatgactaaaactgcaaaaaaaacatatagtttagggacgattttgttcgatttaaaagaggtaagaccaatttcgtgaattg 37421194  T
Q  128 gtaaaaatg 136  Q
    || ||||||    
T  37421193 gtcaaaatg 37421185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 2868116 - 2868235
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||||||||||||| |||| ||||||||||||       |||||| | |||| |||||| |||||||||||||||||||| ||||| ||||||    
T  2868116 tttctggagttggaaatagggggatatgactaaaactgcaaaaaa-catatagtgtagggacgattttgttcgatttaaaagaggtaggaccattttcgt 2868214  T
Q  122 gagttggtaaaaatgtaagga 142  Q
    | |||||| ||||||| ||||    
T  2868215 gtgttggtcaaaatgtgagga 2868235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 4080152 - 4080039
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||| |||||||||||        |||||| |||||| |||||| |||||||||||||| ||||| || ||||||||||||||||    
T  4080152 agttggaaatagggagatatgactaaaactg-taaaaaacatatagtttagggacgattttgttcgatttaaaataggtacgatcaatttcgtgagttgg 4080054  T
Q  129 taaaaatgtaaggac 143  Q
    | || ||| ||||||    
T  4080053 tcaagatgcaaggac 4080039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 23340321 - 23340208
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||| ||||||| ||||||||||||        ||||| |||| || ||||| ||||||||||||||||| || ||||||||||||    
T  23340321 tttctggagttggaaataaggagatatgactaaaactgcaaaaaat-atatagtttatgagcgattttgttcgatttaaaagagataggaccaatttcgt 23340223  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  23340222 gagttggtcaaaatg 23340208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 8230049 - 8230162
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||||||||||||| |||| ||||||||||||       |||||| |||||| |||||| ||||||||||||||||||||| |||| ||||||    
T  8230049 tttctggagttggaaatagggggatatgactaaaactgcaaaaaa-catatagtttagggacgattttgttcgatttaaaagaggtataaccattttcgt 8230147  T
Q  122 gagttggtaaaaatg 136  Q
    || | ||| ||||||    
T  8230148 gaataggtcaaaatg 8230162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 50304532 - 50304464
Alignment:
Q  68 catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    |||||| |||||  |||||| |||||||||||||||||||||||||| |||||||||||||| ||||||    
T  50304532 catatagtttagagacgattttgttcgatttaaaagaggtatgaccattttcgtgagttggtcaaaatg 50304464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 29439308 - 29439443
Alignment:
Q  1 gtggttggactaaaactgtcatttctgaagttggaaatagggagataggactaaaactgc-nnnnnnncatatactttaggaacgattctgttcgattta 99  Q
    ||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||        |||||| |||| | |||||| |||||||||||    
T  29439308 gtggttggactaaaactgtcatttctggagtttgaaata-ggagataggactaaatctgcaaaaaaaacatatagtttaaggacgattttgttcgattta 29439406  T
Q  100 aaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    ||| || || || || |||||||||||| | ||||||    
T  29439407 aaaaagataggatcattttcgtgagttgatcaaaatg 29439443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 34555788 - 34555903
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnn-catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcg 120  Q
    |||||| ||||||||||||||||||| ||||||||||||        |||||| |||| | |||||| |||||||||||||| || || ||||| |||||    
T  34555788 tttctggagttggaaatagggagatatgactaaaactgcaaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcg 34555887  T
Q  121 tgagttggtaaaaatg 136  Q
    ||||||||| ||||||    
T  34555888 tgagttggtcaaaatg 34555903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 37505209 - 37505092
Alignment:
Q  19 tcatttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaattt 118  Q
    |||||| || ||||| ||||||||| ||||||||||||||||       |||||| |||| | |||||| |||||||||||||| || ||  |||| |||    
T  37505209 tcatttttggagttgaaaatagggaaataggactaaaactgcaaaaaaacatatagtttaaggacgattttgttcgatttaaaaaagatagaaccatttt 37505110  T
Q  119 cgtgagttggtaaaaatg 136  Q
    ||||||||||| ||||||    
T  37505109 cgtgagttggtcaaaatg 37505092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 37505483 - 37505587
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||| ||||||||||||||||||||||||||       |||||| |||| | |||||| |||| | |||||||||| ||||| ||||||||||||||||    
T  37505483 agttgaaaatagggagataggactaaaactgcaaaaa--catatagtttatggacgattttgtttgttttaaaagagatatgatcaatttcgtgagttgg 37505580  T
Q  129 taaaaat 135  Q
    | |||||    
T  37505581 tcaaaat 37505587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 44954634 - 44954747
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| | | |||| |||| ||||||||| |||||||| || |||| |    
T  44954634 tttctggagttggaaatagggagataggactaaaactgc-aaaaaacatatagtttatggatgattttgtttgatttaaaaaaggtatgatcattttcat 44954732  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  44954733 gagttggtcaaaatg 44954747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 9992293 - 9992182
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||||||||||||||||||||||||||       |||||| |||| | || ||| |||||||||||||| || || ||||| || |||    
T  9992293 tttctggagttggaaatagggagataggactaaaactgc-aaaaaacatatagtttaaggaccattttgttcgatttaaaaaagataggaccatttccgt 9992195  T
Q  122 gagttggtaaaaa 134  Q
    |||||||| ||||    
T  9992194 gagttggtcaaaa 9992182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 21938694 - 21938588
Alignment:
Q  29 agttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttgg 128  Q
    ||||||||||||||||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| || || || || ||||||||||||     
T  21938694 agttggaaatagggagataggactaaaactgc-aaaaaacatatagtttatggacgattttgttcgatttaaaaaagataagatcattttcgtgagttga 21938596  T
Q  129 taaaaatg 136  Q
    | ||||||    
T  21938595 tcaaaatg 21938588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 44954364 - 44954251
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||||| || |||||| ||||||||||||       |||||| ||||   |||||| |||| ||||||||| ||||||||||| ||||||    
T  44954364 tttctggagttggaaacagagagatacgactaaaactgcaaaaaa-catataatttaaagacgattttgttggatttaaaaaaggtatgaccattttcgt 44954266  T
Q  122 gagttggtaaaaatg 136  Q
    |||||||| ||||||    
T  44954265 gagttggtcaaaatg 44954251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 9992563 - 9992683
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||| |||||||||||||||||||| |||||       |||||| |||| | |||||| |||||||||||||| || || ||||| |||| |    
T  9992563 tttctggagttgaaaatagggagataggactaatactgcaaaaaa-catatagtttaagcacgattttgttcgatttaaaaaagataggaccattttcat 9992661  T
Q  122 gagttggtaaaaatgtaaggac 143  Q
    ||||| || |||||| ||||||    
T  9992662 gagtttgtcaaaatgcaaggac 9992683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 10278958 - 10279066
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| ||||||| ||| |||||||||||||||||||        |||||| |||| | |||||| |||||||||||||| || || ||||| ||||||    
T  10278958 tttctggagttggatatatggagataggactaaaactg----aaaacatatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcgt 10279053  T
Q  122 gagttggtaaaaa 134  Q
    |||||||| ||||    
T  10279054 gagttggtcaaaa 10279066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 17641503 - 17641403
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||| |||||||||||||||||||| ||||||||| |       | |||| |||| |||| ||| |||||||||||||| ||||||||||| ||||||    
T  17641503 tttctggagttggaaatagggagatagaactaaaactacaaaaaa-cgtatagtttaagaacaattttgttcgatttaaaaaaggtatgaccattttcgt 17641405  T
Q  122 ga 123  Q
    ||    
T  17641404 ga 17641403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 2867983 - 2867936
Alignment:
Q  89 tgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    ||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  2867983 tgttcgatttaaaagagatatgatcattttcgtgagttggtcaaaatg 2867936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 23526735 - 23526676
Alignment:
Q  84 gattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatgtaaggac 143  Q
    |||| |||||||||||||||||| | ||||| ||||||||| |||| ||||||| |||||    
T  23526735 gattttgttcgatttaaaagaggcaggaccattttcgtgagctggtcaaaatgtgaggac 23526676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 45048248 - 45048173
Alignment:
Q  68 catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatgtaaggac 143  Q
    |||||| |||| | |||||| ||||| ||||||||||||||  |||| |||||| ||||||| |||||| ||||||    
T  45048248 catatagtttatggacgattttgttcaatttaaaagaggtagaaccattttcgtaagttggtcaaaatgcaaggac 45048173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 1744465 - 1744427
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgc 60  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  1744465 tttctggagttggaaatagggagatatgactaaaactgc 1744427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 8229778 - 8229740
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgc 60  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  8229778 tttctggagttagaaatagggagataggactaaaactgc 8229740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 9833612 - 9833666
Alignment:
Q  75 tttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggt 129  Q
    |||||| |||||| |||||||||| ||||||| ||||| | ||||||||||||||    
T  9833612 tttagggacgattttgttcgatttgaaagaggcatgactattttcgtgagttggt 9833666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 16299090 - 16299128
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgc 60  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  16299090 tttctggagttggaaatatggagataggactaaaactgc 16299128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 50926316 - 50926255
Alignment:
Q  75 tttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    |||||| |||||| |||||||||| ||||||||||||  | ||||||||| |||| ||||||    
T  50926316 tttagggacgattttgttcgatttgaaagaggtatgattattttcgtgagctggtcaaaatg 50926255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 30787251 - 30787310
Alignment:
Q  68 catatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttg 127  Q
    |||||| |||| | |||||| |||||||||| ||| || |||||||| ||||||||||||    
T  30787251 catatagtttaaggacgattttgttcgattttaaaaagatatgaccattttcgtgagttg 30787310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 50305239 - 50305306
Alignment:
Q  69 atatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatg 136  Q
    ||||| |||| | |||||| |||||||||||||| || || ||||| |||| ||||||||| ||||||    
T  50305239 atatagtttaaggacgattttgttcgatttaaaaaagataggaccattttcatgagttggttaaaatg 50305306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 45; Significance: 5e-17; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 46396 - 46291
Alignment:
Q  31 ttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggta 130  Q
    ||||||||||||||||| ||||||||||||       |||||| |||||| | |||| ||||||||||||||||||||  |||| |||||| |||||||     
T  46396 ttggaaatagggagatatgactaaaactgcaaaaaaacatatagtttagggatgattttgttcgatttaaaagaggtagaaccattttcgtaagttggtc 46297  T
Q  131 aaaatg 136  Q
    ||||||    
T  46296 aaaatg 46291  T

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Target: scaffold0712 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 6799 - 6924
Alignment:
Q  22 tttctgaagttggaaatagggagatagg----actaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatt 117  Q
    |||||| ||||| |||||||||||||||    |||||||||||       ||| || |||||| |||||| |||||||||||||||| ||| ||||||||    
T  6799 tttctggagttgaaaatagggagataggtaggactaaaactgcaaaaaaacatgtagtttaggtacgattttgttcgatttaaaagatgtaagaccaatt 6898  T
Q  118 tcgtgagttggtaaaaatgtaaggac 143  Q
    |||| | ||||| |||||| ||||||    
T  6899 tcgtaaattggtcaaaatgcaaggac 6924  T

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Target: scaffold0712; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 6530 - 6417
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||||||||||||||||| ||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| || ||  |||| |||| |    
T  6530 tttctgaagttggaaataggaagataggactaaaactgc-aaaaaacatataatttaaggacgattttgttcgatttaaaaaagatagtaccattttcat 6432  T
Q  122 gagttggtaaaaatg 136  Q
    |||||| | ||||||    
T  6431 gagttgatcaaaatg 6417  T

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Target: scaffold0709 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 6817 - 6942
Alignment:
Q  22 tttctgaagttggaaatagggagatagg----actaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatt 117  Q
    |||||| ||||| |||||||||||||||    |||||||||||       ||| || |||||| |||||| |||||||||||||||| ||| ||||||||    
T  6817 tttctggagttgaaaatagggagataggtaggactaaaactgcaaaaaaacatgtagtttaggtacgattttgttcgatttaaaagatgtaagaccaatt 6916  T
Q  118 tcgtgagttggtaaaaatgtaaggac 143  Q
    |||| | ||||| |||||| ||||||    
T  6917 tcgtaaattggtcaaaatgcaaggac 6942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 6548 - 6435
Alignment:
Q  22 tttctgaagttggaaatagggagataggactaaaactgcnnnnnnncatatactttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgt 121  Q
    |||||||||||||||||||| ||||||||||||||||||       |||||| |||| | |||||| |||||||||||||| || ||  |||| |||| |    
T  6548 tttctgaagttggaaataggaagataggactaaaactgc-aaaaaacatataatttaaggacgattttgttcgatttaaaaaagatagtaccattttcat 6450  T
Q  122 gagttggtaaaaatg 136  Q
    |||||| | ||||||    
T  6449 gagttgatcaaaatg 6435  T

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Target: scaffold0025 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 78457 - 78417
Alignment:
Q  20 catttctgaagttggaaatagggagataggactaaaactgc 60  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  78457 catttctggagttggaaatagagagataggactaaaactgc 78417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 205827 - 205895
Alignment:
Q  75 tttaggaacgattctgttcgatttaaaagaggtatgaccaatttcgtgagttggtaaaaatgtaaggac 143  Q
    |||||| ||| || |||||||||| ||||||| | ||||| |||||||||||||| ||||||| |||||    
T  205827 tttagggacggttttgttcgatttgaaagaggcaggaccattttcgtgagttggtcaaaatgtgaggac 205895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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