View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5814-19 (Length: 143)

Name: Solexa-NF5814-19
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5814-19
Solexa-NF5814-19
[»] scaffold0197 (2 HSPs)
scaffold0197 (4-143)||(19257-19396)
scaffold0197 (9-143)||(14407-14541)
[»] chr3 (12 HSPs)
chr3 (4-143)||(24967961-24968100)
chr3 (27-143)||(10207787-10207904)
chr3 (27-143)||(2677202-2677319)
chr3 (27-143)||(2673046-2673163)
chr3 (9-143)||(8512069-8512204)
chr3 (9-143)||(8516949-8517084)
chr3 (9-143)||(32475338-32475472)
chr3 (9-143)||(32480196-32480330)
chr3 (14-143)||(18656285-18656415)
chr3 (47-143)||(22173330-22173426)
chr3 (40-143)||(2671725-2671828)
chr3 (40-143)||(7167100-7167201)
[»] scaffold0028 (1 HSPs)
scaffold0028 (4-143)||(149048-149187)
[»] chr6 (13 HSPs)
chr6 (4-143)||(16838598-16838737)
chr6 (4-143)||(6005271-6005410)
chr6 (4-143)||(5343334-5343474)
chr6 (27-143)||(33330560-33330678)
chr6 (27-143)||(33336057-33336175)
chr6 (35-143)||(28155694-28155802)
chr6 (14-143)||(14742536-14742667)
chr6 (53-143)||(14737718-14737808)
chr6 (17-143)||(6438354-6438481)
chr6 (17-143)||(11856825-11856953)
chr6 (53-143)||(28184356-28184448)
chr6 (17-143)||(22010800-22010928)
chr6 (47-143)||(30125940-30126036)
[»] chr5 (16 HSPs)
chr5 (4-143)||(31401942-31402081)
chr5 (4-143)||(2785229-2785368)
chr5 (12-143)||(31397093-31397224)
chr5 (4-143)||(33791170-33791309)
chr5 (4-143)||(33768033-33768172)
chr5 (35-143)||(37556747-37556855)
chr5 (35-143)||(37561569-37561677)
chr5 (17-143)||(27444823-27444952)
chr5 (17-143)||(27449667-27449796)
chr5 (17-143)||(43592132-43592261)
chr5 (17-143)||(28807677-28807806)
chr5 (40-143)||(1457290-1457393)
chr5 (53-143)||(15044540-15044630)
chr5 (17-143)||(43598577-43598706)
chr5 (17-143)||(43604069-43604198)
chr5 (17-143)||(43609561-43609690)
[»] chr8 (6 HSPs)
chr8 (4-143)||(35745245-35745384)
chr8 (9-143)||(10684362-10684496)
chr8 (53-143)||(25328420-25328509)
chr8 (40-143)||(6311151-6311254)
chr8 (53-143)||(39784965-39785055)
chr8 (40-143)||(7290055-7290158)
[»] scaffold0259 (1 HSPs)
scaffold0259 (4-143)||(2343-2482)
[»] chr2 (5 HSPs)
chr2 (17-143)||(19344274-19344400)
chr2 (17-143)||(19349132-19349258)
chr2 (53-143)||(32246638-32246728)
chr2 (53-143)||(39812129-39812219)
chr2 (17-143)||(44312727-44312855)
[»] chr1 (6 HSPs)
chr1 (27-143)||(43988581-43988697)
chr1 (17-143)||(39445353-39445480)
chr1 (35-143)||(44023997-44024104)
chr1 (17-143)||(1055116-1055243)
chr1 (38-143)||(25445217-25445321)
chr1 (87-143)||(41398091-41398147)
[»] scaffold0009 (1 HSPs)
scaffold0009 (9-143)||(182062-182196)
[»] chr7 (12 HSPs)
chr7 (9-143)||(16879926-16880060)
chr7 (9-143)||(16884782-16884916)
chr7 (9-143)||(24261421-24261555)
chr7 (9-143)||(24266300-24266434)
chr7 (13-143)||(21812339-21812470)
chr7 (25-143)||(24024439-24024559)
chr7 (17-143)||(19992166-19992293)
chr7 (25-143)||(20357670-20357789)
chr7 (14-143)||(12406185-12406316)
chr7 (53-142)||(31109725-31109813)
chr7 (47-143)||(12396765-12396861)
chr7 (83-143)||(4866583-4866643)
[»] chr4 (9 HSPs)
chr4 (17-143)||(18855580-18855707)
chr4 (14-143)||(5732515-5732645)
chr4 (25-143)||(3813877-3813998)
chr4 (47-143)||(9224542-9224638)
chr4 (47-143)||(9229329-9229425)
chr4 (53-143)||(45347959-45348049)
chr4 (53-143)||(45357438-45357528)
chr4 (17-143)||(51520310-51520439)
chr4 (17-143)||(56146814-56146943)
[»] scaffold0355 (2 HSPs)
scaffold0355 (25-143)||(9752-9871)
scaffold0355 (25-129)||(1-104)
[»] scaffold0464 (1 HSPs)
scaffold0464 (17-143)||(216-343)
[»] scaffold0135 (1 HSPs)
scaffold0135 (47-143)||(35197-35293)


Alignment Details
Target: scaffold0197 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 19257 - 19396
Alignment:
Q  4 gtttattcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttg 103  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19257 gtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttg 19356  T
Q  104 gaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19357 gaggccatttgcactcatagattatctctatcacttgctc 19396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 14407 - 14541
Alignment:
Q  9 ttcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttg-ttagcttggagg 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  14407 ttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttggagg 14505  T
Q  108 ccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||||| ||||||| |||||||    
T  14506 ccatttgcactcatagattacctctatctcttgctc 14541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 24968100 - 24967961
Alignment:
Q  4 gtttattcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttg 103  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24968100 gtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttg 24968001  T
Q  104 gaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24968000 gaggccatttgcactcatagattatctctatcacttgctc 24967961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 10207904 - 10207787
Alignment:
Q  27 ttatcttgt-atgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagat 125  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10207904 ttatcttgttatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcatagat 10207805  T
Q  126 tatctctatcacttgctc 143  Q
    ||||||||||||||||||    
T  10207804 tatctctatcacttgctc 10207787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 2677202 - 2677319
Alignment:
Q  27 ttatcttgt-atgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagat 125  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  2677202 ttatcttgttatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgctctcatagat 2677301  T
Q  126 tatctctatcacttgctc 143  Q
    ||||||||||||||||||    
T  2677302 tatctctatcacttgctc 2677319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 2673046 - 2673163
Alignment:
Q  27 ttatcttgt-atgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagat 125  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||    
T  2673046 ttatcttgttatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttactctcatagat 2673145  T
Q  126 tatctctatcacttgctc 143  Q
    ||||||||||||||||||    
T  2673146 tatctctatcacttgctc 2673163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 8512204 - 8512069
Alignment:
Q  9 ttcgttttcttttatcgctt-atcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggagg 107  Q
    ||||||||| ||||||| || ||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |    
T  8512204 ttcgttttcgtttatcgttttatcttgtatgcttgttaactcttagtgtggttgtgctacacattaggcttaggctgttttgttgttgttagcttggaag 8512105  T
Q  108 ccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||| |||||||||||||||||||||||||||    
T  8512104 ccatttgctctcatagattatctctatcacttgctc 8512069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 8517084 - 8516949
Alignment:
Q  9 ttcgttttcttttatcgctt-atcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggagg 107  Q
    ||||||||| ||||||| || ||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |    
T  8517084 ttcgttttcgtttatcgttttatcttgtatgcttgttaactcttagtgtggttgtgctacacattaggcttaggctgttttgttgttgttagcttggaag 8516985  T
Q  108 ccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||| |||||||||||||||||||||||||||    
T  8516984 ccatttgctctcatagattatctctatcacttgctc 8516949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 32475472 - 32475338
Alignment:
Q  9 ttcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttg-ttagcttggagg 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| |||| |||||||    
T  32475472 ttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagtttggagg 32475374  T
Q  108 ccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||||| ||||||| |||||||    
T  32475373 ccatttgcactcatagattacctctatctcttgctc 32475338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 32480330 - 32480196
Alignment:
Q  9 ttcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttg-ttagcttggagg 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| |||| |||||||    
T  32480330 ttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagtttggagg 32480232  T
Q  108 ccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||||| ||||||| |||||||    
T  32480231 ccatttgcactcatagattacctctatctcttgctc 32480196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 18656415 - 18656285
Alignment:
Q  14 tttcttttatcgcttatcttgtatgctt-gttagctcttagtgtggttttgctatacattaggcttaggt-tgttttgttgttgttagcttggaggccat 111  Q
    |||| |||| || ||||||||| ||||| |||||||||| |||||||||| ||||||| ||| ||||||  |||||||||||||||||||||||| ||||    
T  18656415 tttcctttaccgtttatcttgtttgctttgttagctctttgtgtggtttttctatacactag-cttagggctgttttgttgttgttagcttggagaccat 18656317  T
Q  112 ttgcactcatagattatctctatcacttgctc 143  Q
    |||  ||||| ||||| | | |||||||||||    
T  18656316 ttgttctcattgattaccaccatcacttgctc 18656285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 22173330 - 22173426
Alignment:
Q  47 ctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||| |||||||||||||||||| ||| ||  || ||||||||||||||| |||||||| |||||||  ||||| ||||| | ||||| |||||||    
T  22173330 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctc 22173426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 2671725 - 2671828
Alignment:
Q  40 ttgttagctcttagtgtggttttgctatacattaggcttaggttgtttt-gttgttgttagcttggaggccatttgcactcatagattatctctatcact 138  Q
    |||||| ||||| |||||||||| || |||| ||| ||  || |||||| ||||||||| |||||||| |||||||  ||||||||||| | ||||| ||    
T  2671725 ttgttatctctttgtgtggtttttctctacactagactagggctgtttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctct 2671823  T
Q  139 tgctc 143  Q
    |||||    
T  2671824 tgctc 2671828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 7167201 - 7167100
Alignment:
Q  40 ttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcactt 139  Q
    |||||| ||||| ||||||||||||| |||| ||| ||  || ||||||||||||||| |||||||  ||||||   ||||||||||| | ||||| |||    
T  7167201 ttgttatctctttgtgtggttttgctctacactagtctagggctgttttgttgttgtt-gcttggaaaccattt-tgctcatagattaccactatctctt 7167104  T
Q  140 gctc 143  Q
    ||||    
T  7167103 gctc 7167100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 124; Significance: 4e-64; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 124; E-Value: 4e-64
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 149048 - 149187
Alignment:
Q  4 gtttattcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttg 103  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  149048 gtttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttg 149147  T
Q  104 gaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  149148 gaggccatttgcactcatagattatctctatcacttgctc 149187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 4e-64; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 4e-64
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 16838737 - 16838598
Alignment:
Q  4 gtttattcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttg 103  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16838737 gtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttg 16838638  T
Q  104 gaggccatttgcactcatagattatctctatcacttgctc 143  Q
     |||||||||||||||||||||||||||||||||||||||    
T  16838637 aaggccatttgcactcatagattatctctatcacttgctc 16838598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 6005410 - 6005271
Alignment:
Q  4 gtttattcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttg 103  Q
    |||| ||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6005410 gtttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttg 6005311  T
Q  104 gaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6005310 gaggccatttgcactcatagattatctctatcacttgctc 6005271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 5343474 - 5343334
Alignment:
Q  4 gtttattcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggtttt-gctatacattaggcttaggttgttttgttgttgttagctt 102  Q
    |||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||    
T  5343474 gtttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggtttttgctatactttaggcttaggctgttttgttgttgttagctt 5343375  T
Q  103 ggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5343374 ggaggccatttgcactcatagattatctctatcacttgctc 5343334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 33330560 - 33330678
Alignment:
Q  27 ttatcttgt-atgcttgttagctcttagtgtggtttt-gctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcataga 124  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33330560 ttatcttgttatgcttgttagctcttagtgtggtttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgcactcataga 33330659  T
Q  125 ttatctctatcacttgctc 143  Q
    |||||||||||||||||||    
T  33330660 ttatctctatcacttgctc 33330678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 33336057 - 33336175
Alignment:
Q  27 ttatcttgt-atgcttgttagctcttagtgtggttttg-ctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcataga 124  Q
    ||||||||| |||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  33336057 ttatcttgttatgcttgttagctcttagtgtggtttttactatacattaggcttaggctgttttgttgttgttagtttggaggccatttgcactcataga 33336156  T
Q  125 ttatctctatcacttgctc 143  Q
    |||||||||||||||||||    
T  33336157 ttatctctatcacttgctc 33336175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 28155694 - 28155802
Alignment:
Q  35 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 134  Q
    ||||||||||||||||||||||||||||||||||||  || | |||| ||||||||||||||||||||| || |||||||| ||||| ||||||| ||||    
T  28155694 tatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttgaagaccatttgctctcattgattatcactat 28155793  T
Q  135 cacttgctc 143  Q
    |||||||||    
T  28155794 cacttgctc 28155802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 14742536 - 14742667
Alignment:
Q  14 tttcttttatcgcttatcttgtat-gctt-gttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccat 111  Q
    ||||||||| |||||||||||| | |||| | || ||||| |||||||||||||||||| ||| ||  || ||||||||||||||  |||||||| ||||    
T  14742536 tttcttttaccgcttatcttgttttgctttgatatctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtatgcttggagaccat 14742635  T
Q  112 ttgcactcatagattatctctatcacttgctc 143  Q
    |||  ||||| ||||||| |||||||||||||    
T  14742636 ttgttctcattgattatcactatcacttgctc 14742667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 14737718 - 14737808
Alignment:
Q  53 gtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||| ||| ||  || ||||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||||    
T  14737718 gtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattatcactatcacttgctc 14737808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 6438481 - 6438354
Alignment:
Q  17 cttttatcgcttatcttgt--atgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttg 114  Q
    |||||| || |||||||||  |||||||||||||||| |||||||||||||||||| || |||||||    |||||||||||| ||||||| |||||| |    
T  6438481 cttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacacta-gcttagggctgtttgttgttgtttgcttggaagccattgg 6438383  T
Q  115 cactcatagattatctctatcacttgctc 143  Q
      ||||| ||||| | |||||||||||||    
T  6438382 ttctcattgattaccactatcacttgctc 6438354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 11856953 - 11856825
Alignment:
Q  17 cttttatcgcttatcttg-tatgc-ttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttg 114  Q
    |||||||||||| ||||| | ||| ||| || ||||| |||||||||||||||||| ||| ||  || ||||||||||||||| |||||||| |||||||    
T  11856953 cttttatcgcttgtcttgttttgctttggtatctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttg 11856854  T
Q  115 cactcatagattatctctatcacttgctc 143  Q
      ||||| ||||| | ||||| |||||||    
T  11856853 ttctcattgattaccactatctcttgctc 11856825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 28184448 - 28184356
Alignment:
Q  53 gtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggcca--tttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||| ||| ||  || ||||||||||||||| |||||||| |||  ||||  ||||| ||||||| |||||||||||||    
T  28184448 gtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttttgttctcattgattatcactatcacttgctc 28184356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 22010800 - 22010928
Alignment:
Q  17 cttttatcgcttatcttgtat-gctt-gttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttg 114  Q
    ||||||||||||||||||| | |||| | || ||||| |||||||||||||||||| | | ||  ||  | |||||||||||| |||||||| |||||||    
T  22010800 cttttatcgcttatcttgttttgctttggtatctctttgtgtggttttgctatacacttgtctagggcggctttgttgttgtttgcttggagaccatttg 22010899  T
Q  115 cactcatagattatctctatcacttgctc 143  Q
      ||||| ||||| | |||||||||||||    
T  22010900 ttctcattgattaccactatcacttgctc 22010928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 30125940 - 30126036
Alignment:
Q  47 ctcttagtgtggttttgctatacattaggcttaggttgtttt-gttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||| ||||||||||||| |||| ||| ||  || |||||| ||||| |||||||||||| |||||||  ||||||||||||| ||| | |||||||    
T  30125940 ctctttgtgtggttttgctctacactagtctagggctgtttttgttgtagttagcttggagaccatttg-gctcatagattatcactacctcttgctc 30126036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 4e-64; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 4e-64
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 31401942 - 31402081
Alignment:
Q  4 gtttattcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttg 103  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  31401942 gtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctttacattaggcttaggctgttttgttgttgttagcttg 31402041  T
Q  104 gaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31402042 gaggccatttgcactcatagattatctctatcacttgctc 31402081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 2785368 - 2785229
Alignment:
Q  4 gtttattcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttg 103  Q
    |||| ||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2785368 gtttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttg 2785269  T
Q  104 gaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2785268 gaggccatttgcactcatagattatctctatcacttgctc 2785229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 31397093 - 31397224
Alignment:
Q  12 gttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccat 111  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  31397093 gttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctttacattaggcttaggatgttttgttgttgttagcttggaggccat 31397192  T
Q  112 ttgcactcatagattatctctatcacttgctc 143  Q
    ||||||||||||||||||||||||||||||||    
T  31397193 ttgcactcatagattatctctatcacttgctc 31397224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 33791309 - 33791170
Alignment:
Q  4 gtttattcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttg 103  Q
    |||| ||| ||| ||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33791309 gtttgttcttttccttttatcgtttatcttgtatgcttgttagctctatatgtggttttgctatacattaggcttaggctgttttgttgttgttagcttg 33791210  T
Q  104 gaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33791209 gaggccatttgcactcatagattatctctatcacttgctc 33791170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 33768172 - 33768033
Alignment:
Q  4 gtttattcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttg 103  Q
    |||| ||| ||| ||||||||| ||||| ||||||||||||||||||   |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33768172 gtttgttcttttccttttatcgtttatcctgtatgcttgttagctctatatgtggttttgctatacattaggcttaggctgttttgttgttgttagcttg 33768073  T
Q  104 gaggccatttgcactcatagattatctctatcacttgctc 143  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  33768072 gaggtcatttgcactcatagattatctctatcacttgctc 33768033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 37556747 - 37556855
Alignment:
Q  35 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 134  Q
    ||||||||||||||||||||||||||||||||||||  || | |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  37556747 tatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttggaggccatttgctctcatagattatcactat 37556846  T
Q  135 cacttgctc 143  Q
    |||||||||    
T  37556847 cacttgctc 37556855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 37561569 - 37561677
Alignment:
Q  35 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 134  Q
    ||||||||||||||||||||||||||||||||||||  || | |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  37561569 tatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttggaggccatttgctctcatagattatcactat 37561668  T
Q  135 cacttgctc 143  Q
    |||||||||    
T  37561669 cacttgctc 37561677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 27444952 - 27444823
Alignment:
Q  17 cttttatcgcttatcttgt--atgctt-gttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccattt 113  Q
    |||||||| ||||||||||  |||||| |||| ||||| |||||||||||||||||| ||| ||  || || | |||||||||| |||||||| ||||||    
T  27444952 cttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgttgtttgcttggagaccattt 27444853  T
Q  114 gcactcatagattatctctatcacttgctc 143  Q
    | |||||| ||||| | ||||| |||||||    
T  27444852 gtactcattgattaccactatctcttgctc 27444823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 27449796 - 27449667
Alignment:
Q  17 cttttatcgcttatcttgt--atgctt-gttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccattt 113  Q
    |||||||| ||||||||||  |||||| |||| ||||| |||||||||||||||||| ||| ||  || || | |||||||||| |||||||| ||||||    
T  27449796 cttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgttgtttgcttggagaccattt 27449697  T
Q  114 gcactcatagattatctctatcacttgctc 143  Q
    | |||||| ||||| | ||||| |||||||    
T  27449696 gtactcattgattaccactatctcttgctc 27449667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 43592261 - 43592132
Alignment:
Q  17 cttttatcgcttatcttgt--atgctt-gttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccattt 113  Q
    |||||||| ||||||||||  |||||| |||| ||||| |||||||||||||||||| ||| ||  || || |||||||||||| |||||||| ||||||    
T  43592261 cttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccattt 43592162  T
Q  114 gcactcatagattatctctatcacttgctc 143  Q
    |  ||||| ||||| | ||||| |||||||    
T  43592161 gttctcattgattaccactatctcttgctc 43592132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 28807677 - 28807806
Alignment:
Q  17 cttttatcgcttatcttgt--atgcttgttagctcttagtgtggtttt--gctatacattaggcttaggttgttttgttgttgttagcttggaggccatt 112  Q
    |||||| || |||||||||  |||||||||||||||| | ||||||||  |||||||| ||| ||||||    |||||||||||| ||||||| ||||||    
T  28807677 cttttaccgtttatcttgtttatgcttgttagctctttgagtggttttttgctatacactag-cttagggctgtttgttgttgtttgcttggaagccatt 28807775  T
Q  113 tgcactcatagattatctctatcacttgctc 143  Q
    ||  ||||| ||||||| |||||||||||||    
T  28807776 tgttctcattgattatcactatcacttgctc 28807806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 1457290 - 1457393
Alignment:
Q  40 ttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcactt 139  Q
    |||||| ||||| |||||||||||||||||| ||| ||  || || |||||||||||| |||||||| |||||||  ||||| ||||| | ||||| |||    
T  1457290 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctctt 1457389  T
Q  140 gctc 143  Q
    ||||    
T  1457390 gctc 1457393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 15044630 - 15044540
Alignment:
Q  53 gtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||| ||| ||  || ||||||||||||||| | |||||| |||||||  ||||| ||||| | |||||||||||||    
T  15044630 gtgtggttttgctatacactagtctagggctgttttgttgttgttggtttggagaccatttgttctcattgattaccactatcacttgctc 15044540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 43598706 - 43598577
Alignment:
Q  17 cttttatcgcttatcttgt--atgctt-gttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccattt 113  Q
    |||||||| ||||||||||  |||||| |||| ||||| |||||||||||||||||| ||| ||  || || |||||||||||| |||||||| ||| ||    
T  43598706 cttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaatt 43598607  T
Q  114 gcactcatagattatctctatcacttgctc 143  Q
    |  ||||| ||||| | ||||| |||||||    
T  43598606 gttctcattgattaccactatctcttgctc 43598577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 43604198 - 43604069
Alignment:
Q  17 cttttatcgcttatcttgt--atgctt-gttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccattt 113  Q
    |||||||| ||||||||||  |||||| |||| ||||| |||||||||||||||||| ||| ||  || || |||||||||||| |||||||| ||| ||    
T  43604198 cttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaatt 43604099  T
Q  114 gcactcatagattatctctatcacttgctc 143  Q
    |  ||||| ||||| | ||||| |||||||    
T  43604098 gttctcattgattaccactatctcttgctc 43604069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 43609690 - 43609561
Alignment:
Q  17 cttttatcgcttatcttgt--atgctt-gttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccattt 113  Q
    |||||||| ||||||||||  |||||| |||| ||||| |||||||||||||||||| ||| ||  || || |||||||||||| |||||||| ||| ||    
T  43609690 cttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaatt 43609591  T
Q  114 gcactcatagattatctctatcacttgctc 143  Q
    |  ||||| ||||| | ||||| |||||||    
T  43609590 gttctcattgattaccactatctcttgctc 43609561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 9e-62; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 35745384 - 35745245
Alignment:
Q  4 gtttattcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttg 103  Q
    |||| ||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35745384 gtttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttg 35745285  T
Q  104 gaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35745284 gaggccatttgcactcatagattatctctatcacttgctc 35745245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 10684362 - 10684496
Alignment:
Q  9 ttcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttg-ttagcttggagg 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  10684362 ttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttggagg 10684460  T
Q  108 ccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||||| ||||||| |||||||    
T  10684461 ccatttgcactcatagattacctctatctcttgctc 10684496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 25328420 - 25328509
Alignment:
Q  53 gtgtggttttgctatacattaggcttagg-ttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||| |||  ||||| |||||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||||    
T  25328420 gtgtggttttgctatacactag--ttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctc 25328509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 6311254 - 6311151
Alignment:
Q  40 ttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcactt 139  Q
    |||||| |||||||||||||||||||||||| ||| ||  || || |||||||||||| |||||||  |||||||  ||||| ||||| | |||||||||    
T  6311254 ttgttatctcttagtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggaaaccatttgttctcattgattaccactatcactt 6311155  T
Q  140 gctc 143  Q
    ||||    
T  6311154 gctc 6311151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 39784965 - 39785055
Alignment:
Q  53 gtgtggttttgctatacattaggcttaggt-tgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||| ||| ||||||  |||||||||||| || |||||||| |||||||  ||||| ||||||| |||||||||||||    
T  39784965 gtgtggttttgctatacactag-cttagggctgttttgttgttattggcttggagaccatttgttctcattgattatcactatcacttgctc 39785055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 7290055 - 7290158
Alignment:
Q  40 ttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcactt 139  Q
    |||||| ||||| |||||||||||||||||| ||| ||  || || |||||||||||| | |||||| |||||||  ||||| ||||| | ||||| |||    
T  7290055 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgtttggagaccatttgttctcattgattaccactatctctt 7290154  T
Q  140 gctc 143  Q
    ||||    
T  7290155 gctc 7290158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 2343 - 2482
Alignment:
Q  4 gtttattcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttg 103  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2343 gtttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttg 2442  T
Q  104 gaggccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  2443 gaggccatttgcactcatggattatctttatcacttgctc 2482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 1e-51; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 19344400 - 19344274
Alignment:
Q  17 cttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgca 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  19344400 cttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgct 19344301  T
Q  117 ctcatagattatctctatcacttgctc 143  Q
    ||||||||||| | ||||| |||||||    
T  19344300 ctcatagattaccactatctcttgctc 19344274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 19349258 - 19349132
Alignment:
Q  17 cttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgca 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  19349258 cttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttggaggccatttgct 19349159  T
Q  117 ctcatagattatctctatcacttgctc 143  Q
    ||||||||||| | ||||| |||||||    
T  19349158 ctcatagattaccactatctcttgctc 19349132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 32246728 - 32246638
Alignment:
Q  53 gtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||| ||| ||  |  |||||||||||||||||||||||| |||||||  ||||||||||| | |||||||||||||    
T  32246728 gtgtggttttgctatacactagtctaggactgttttgttgttgttagcttggagaccatttgttctcatagattaccactatcacttgctc 32246638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 39812129 - 39812219
Alignment:
Q  53 gtgtggttttgctatacattaggcttaggt-tgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||| ||| ||||||  ||||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||||    
T  39812129 gtgtggttttgctatacactag-cttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctc 39812219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 44312727 - 44312855
Alignment:
Q  17 cttttatcgcttatcttgtat-gctt-gttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttg 114  Q
    ||||||||||||||||||| | |||| | || ||||| |||||||||||||||||| | | ||  ||  | |||||||||||| |||||||| |||||||    
T  44312727 cttttatcgcttatcttgttttgctttggtatctctttgtgtggttttgctatacacttgtctagggcggctttgttgttgtttgcttggagaccatttg 44312826  T
Q  115 cactcatagattatctctatcacttgctc 143  Q
      ||||| ||||| | |||||||||||||    
T  44312827 ttctcattgattaccactatcacttgctc 44312855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 2e-50; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 43988581 - 43988697
Alignment:
Q  27 ttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagatt 126  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||    
T  43988581 ttatcttgtatgcttgttagctcttagtgtggttgtgctatacattaggcttaggctgttttgttgttgttagcttggaagccatttgctctcatagatt 43988680  T
Q  127 atctctatcacttgctc 143  Q
    |||||||||||||||||    
T  43988681 atctctatcacttgctc 43988697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 39445480 - 39445353
Alignment:
Q  17 cttttatcgcttatcttgt--atgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttg 114  Q
    |||||| || |||||||||  |||||||||||||||| |||||||||||||||||| || |||||||    |||||||||||| ||||||| ||||||||    
T  39445480 cttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacacta-gcttagggctgtttgttgttgtttgcttggaagccatttg 39445382  T
Q  115 cactcatagattatctctatcacttgctc 143  Q
      | ||| ||||||| |||||||||||||    
T  39445381 ttcacattgattatcactatcacttgctc 39445353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 44023997 - 44024104
Alignment:
Q  35 tatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctat 134  Q
    ||||||||||||||||| |||||||||||||||||| || |||||||    |||||||||||| ||||||| ||||||||  ||||| ||||||| ||||    
T  44023997 tatgcttgttagctctttgtgtggttttgctatacacta-gcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactat 44024095  T
Q  135 cacttgctc 143  Q
    || ||||||    
T  44024096 cagttgctc 44024104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 1055116 - 1055243
Alignment:
Q  17 cttttatcgcttatcttgt--atgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttg 114  Q
    |||||| || |||||||||  |||||||||||||||| |||||||||||||||||| || |||||||    ||||||||||| |||||||| | ||||||    
T  1055116 cttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacacta-gcttagggctgtttgttgttgtaagcttggaagacatttg 1055214  T
Q  115 cactcatagattatctctatcacttgctc 143  Q
      | ||| ||||||| |||||||||||||    
T  1055215 ttcacattgattatcactatcacttgctc 1055243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 38 - 143
Target Start/End: Original strand, 25445217 - 25445321
Alignment:
Q  38 gcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcac 137  Q
    |||||||||||||| |||||||||||||||||| ||| ||||||    |||||||||||| ||||||| ||||||||  ||||| ||||||| ||||| |    
T  25445217 gcttgttagctctttgtgtggttttgctatacactag-cttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcgc 25445315  T
Q  138 ttgctc 143  Q
    ||||||    
T  25445316 ttgctc 25445321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 41398147 - 41398091
Alignment:
Q  87 ttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||||||||| |||||||| |||| ||  ||||| ||||||| |||||||||||||    
T  41398147 ttgttgttgtttgcttggagaccatatgttctcattgattatcactatcacttgctc 41398091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 100; Significance: 8e-50; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 182062 - 182196
Alignment:
Q  9 ttcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttg-ttagcttggagg 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  182062 ttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttggagg 182160  T
Q  108 ccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||||| ||||||| |||||||    
T  182161 ccatttgcactcatagattacctctatctcttgctc 182196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 8e-50; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 16880060 - 16879926
Alignment:
Q  9 ttcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttg-ttagcttggagg 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  16880060 ttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttggagg 16879962  T
Q  108 ccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||||| ||||||| |||||||    
T  16879961 ccatttgcactcatagattacctctatctcttgctc 16879926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 16884916 - 16884782
Alignment:
Q  9 ttcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttg-ttagcttggagg 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  16884916 ttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttggagg 16884818  T
Q  108 ccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||||| ||||||| |||||||    
T  16884817 ccatttgcactcatagattacctctatctcttgctc 16884782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 24261421 - 24261555
Alignment:
Q  9 ttcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttg-ttagcttggagg 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  24261421 ttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttggagg 24261519  T
Q  108 ccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||||| ||||||| |||||||    
T  24261520 ccatttgcactcatagattacctctatctcttgctc 24261555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 24266300 - 24266434
Alignment:
Q  9 ttcgttttcttttatcgcttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttg-ttagcttggagg 107  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  24266300 ttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttggagg 24266398  T
Q  108 ccatttgcactcatagattatctctatcacttgctc 143  Q
    |||||||||||||||||||| ||||||| |||||||    
T  24266399 ccatttgcactcatagattacctctatctcttgctc 24266434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 21812339 - 21812470
Alignment:
Q  13 ttttcttttatcgcttatcttgt--atgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggcca 110  Q
    |||||||||| || |||||||||  |||||||||| ||||| |||||||||||||||||| ||| ||||||    |||||||||||||||||||| ||||    
T  21812339 ttttcttttaccgtttatcttgtttatgcttgttaactctttgtgtggttttgctatacactag-cttagggctgtttgttgttgttagcttggaagcca 21812437  T
Q  111 tttgcactcatagattatctctatcacttgctc 143  Q
    ||||| ||||||||||| | ||||| |||||||    
T  21812438 tttgctctcatagattaccactatctcttgctc 21812470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 24024439 - 24024559
Alignment:
Q  25 gcttatcttgt--atgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcata 122  Q
    |||||||||||  |||||||||||||||| |||||||||||||||| | ||| | |||| ||||||||||||||| |||||||| |||||||  |||||     
T  24024439 gcttatcttgtttatgcttgttagctctttgtgtggttttgctatatactagtcataggctgttttgttgttgtttgcttggagaccatttgttctcatt 24024538  T
Q  123 gattatctctatcacttgctc 143  Q
    ||||| | |||||||||||||    
T  24024539 gattaccactatcacttgctc 24024559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 19992293 - 19992166
Alignment:
Q  17 cttttatcgcttatcttgt--atgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttg 114  Q
    |||||| || |||||||||  |||||||||||||||| |||||||||||||||||| || |||||||    ||||||||||| |||||||| ||||||||    
T  19992293 cttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacacta-gcttagggctgtttgttgttgtaagcttggaagccatttg 19992195  T
Q  115 cactcatagattatctctatcacttgctc 143  Q
      ||||| ||||||| ||||||| |||||    
T  19992194 ttctcattgattatcactatcacctgctc 19992166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 20357670 - 20357789
Alignment:
Q  25 gcttatcttgtatgctt-gttagctcttagtgtggttttgctatacattaggcttaggttgtttt-gttgttgttagcttggaggccatttgcactcata 122  Q
    ||||||||||| ||||| |||| ||||| ||||||||||||| |||| ||| ||  || |||||| |||||||||||||||||| |||||||  ||||||    
T  20357670 gcttatcttgtttgctttgttatctctttgtgtggttttgctctacactagtctagggctgtttttgttgttgttagcttggagaccatttg-gctcata 20357768  T
Q  123 gattatctctatcacttgctc 143  Q
    ||||| | ||||| |||||||    
T  20357769 gattaccactatctcttgctc 20357789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 12406316 - 12406185
Alignment:
Q  14 tttcttttatcgcttatcttgtat-gctt-gttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccat 111  Q
    ||||||||| |||||||||||| | |||| | || ||||| |||||||||||||||||| ||| ||  || || |||||||||||| |||||||| ||||    
T  12406316 tttcttttaccgcttatcttgttttgctttggtatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccat 12406217  T
Q  112 ttgcactcatagattatctctatcacttgctc 143  Q
    |||  ||||| ||||| | ||||| |||||||    
T  12406216 ttgttctcattgattaccactatctcttgctc 12406185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 53 - 142
Target Start/End: Original strand, 31109725 - 31109813
Alignment:
Q  53 gtgtggttttgctatacattaggcttaggt-tgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgct 142  Q
    |||||||||||||||||| |||  |||||  ||||||||||||||| |||||||| |||||||  ||||| ||||||| ||||||||||||    
T  31109725 gtgtggttttgctatacactag--ttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgct 31109813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 143
Target Start/End: Complemental strand, 12396861 - 12396765
Alignment:
Q  47 ctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||| |||||||||||||||||| ||| ||  || || |||||||||||| |||||||| |||||||  ||||| ||||| | ||||| |||||||    
T  12396861 ctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctc 12396765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 4866643 - 4866583
Alignment:
Q  83 tgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||||||||||||| |||||||| |||||||  ||||| ||||| | ||||| |||||||    
T  4866643 tgttttgttgttgtttgcttggagaccatttgtcctcattgattaccactatctcttgctc 4866583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 2e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 18855707 - 18855580
Alignment:
Q  17 cttttatcgcttatcttgt--atgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttg 114  Q
    |||||| || |||||||||  |||||||||||||||| |||||||||||||||||| ||| ||||||    |||||||||||| ||||||| ||||||||    
T  18855707 cttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgtttgttgttgtttgcttggaagccatttg 18855609  T
Q  115 cactcatagattatctctatcacttgctc 143  Q
      ||||| ||||||| |||||||||||||    
T  18855608 ttctcattgattatcactatcacttgctc 18855580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 5732645 - 5732515
Alignment:
Q  14 tttcttttatcgcttatcttgtatgctt-gttagctcttagtgtggttttgctatacattaggcttaggt-tgttttgttgttgttagcttggaggccat 111  Q
    |||| |||| || ||||||||| ||||| |||||||||| |||||||||| ||||||| ||| ||||||  |||||||||||||||||||||||| ||||    
T  5732645 tttcctttaccgtttatcttgtttgctttgttagctctttgtgtggttttactatacactag-cttagggctgttttgttgttgttagcttggagaccat 5732547  T
Q  112 ttgcactcatagattatctctatcacttgctc 143  Q
    |||  ||||| ||||| | | |||||||||||    
T  5732546 ttgttctcattgattaccaccatcacttgctc 5732515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 3813998 - 3813877
Alignment:
Q  25 gcttatcttgt--atgcttgttagctcttagtgtggtttt-gctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcat 121  Q
    |||||||||||  |||||||||||||||| |||||||||| || ||||| ||| ||  |  ||||||||||||||| |||||||| |||||||| |||||    
T  3813998 gcttatcttgtttatgcttgttagctctttgtgtggtttttgcgatacactagtctaggactgttttgttgttgtttgcttggagaccatttgctctcat 3813899  T
Q  122 agattatctctatcacttgctc 143  Q
     ||||| | |||||||||||||    
T  3813898 tgattaccactatcacttgctc 3813877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 9224542 - 9224638
Alignment:
Q  47 ctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||| |||||||||||||||||| ||| ||  || ||||||||||||||| |||||||| |||||||  ||||| ||||| | ||||| |||||||    
T  9224542 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctc 9224638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 9229329 - 9229425
Alignment:
Q  47 ctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||| |||||||||||||||||| ||| ||  || ||||||||||||||| |||||||| |||||||  ||||| ||||| | ||||| |||||||    
T  9229329 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctc 9229425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 45347959 - 45348049
Alignment:
Q  53 gtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||||||||||| |||| ||| ||  |  ||||||||||||||||||||| || |||||||  ||||||||||| | |||||||||||||    
T  45347959 gtgtggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctc 45348049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 45357438 - 45357528
Alignment:
Q  53 gtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||||||||||| |||| ||| ||  |  ||||||||||||||||||||| || |||||||  ||||||||||| | |||||||||||||    
T  45357438 gtgtggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctc 45357528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 51520439 - 51520310
Alignment:
Q  17 cttttatcgcttatcttgt--atgctt-gttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccattt 113  Q
    |||||||| ||||||||||  |||||| |||| ||||| || ||||||||||||||| ||| ||  || || |||||||||||| |||||||| ||||||    
T  51520439 cttttatcacttatcttgtttatgctttgttatctctttgtatggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccattt 51520340  T
Q  114 gcactcatagattatctctatcacttgctc 143  Q
    |  ||||| ||||| | ||||| |||||||    
T  51520339 gttctcattgattaccactatctcttgctc 51520310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 56146814 - 56146943
Alignment:
Q  17 cttttatcgcttatcttgt--atgctt-gttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccattt 113  Q
    |||||||| ||||||||||  |||||| |||| ||||| |||||||||||||||||| ||| ||  || || |||||||||||| |||||||| ||| ||    
T  56146814 cttttatcacttatcttgtttatgctttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaatt 56146913  T
Q  114 gcactcatagattatctctatcacttgctc 143  Q
    |  ||||| ||||| | ||||| |||||||    
T  56146914 gttctcattgattaccactatctcttgctc 56146943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 51; Significance: 1e-20; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 9752 - 9871
Alignment:
Q  25 gcttatcttgt--atgcttgttagctcttagtgtggttttgctatacattaggcttaggt-tgttttgttgttgttagcttggaggccatttgcactcat 121  Q
    |||||||||||  |||||||||||||||| |||||||||||||||| | ||| ||||||  ||||||||||||||| | |||||| |||||||| |||||    
T  9752 gcttatcttgtttatgcttgttagctctt-gtgtggttttgctatatactag-cttagggctgttttgttgttgtttggttggagaccatttgctctcat 9849  T
Q  122 agattatctctatcacttgctc 143  Q
     ||||||| |||||||||||||    
T  9850 tgattatcactatcacttgctc 9871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 1 - 104
Alignment:
Q  25 gcttatcttgt--atgcttgttagctcttagtgtggttttgctatacattaggcttaggt-tgttttgttgttgttagcttggaggccatttgcactcat 121  Q
    |||||||||||  ||||||||||||||   |||||||||||||||||| ||| ||||||  |||||||||||||||  ||||||| |||||||| |||||    
T  1 gcttatcttgtttatgcttgttagctc---gtgtggttttgctatacactag-cttagggctgttttgttgttgtttacttggagaccatttgctctcat 96  T
Q  122 agattatc 129  Q
     |||||||    
T  97 tgattatc 104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 50; Significance: 5e-20; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 343 - 216
Alignment:
Q  17 cttttatcgcttatcttgt--atgcttgttagctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttg 114  Q
    |||||| || |||||||||  |||||||||||||||| |||||||||||||||||| || |||||||    |||||||||||| ||||||| ||||||||    
T  343 cttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacacta-gcttagggctgtttgttgttgtttgcttggaagccatttg 245  T
Q  115 cactcatagattatctctatcacttgctc 143  Q
      ||||| ||||||| | |||||||||||    
T  244 ttctcattgattatcaccatcacttgctc 216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 35197 - 35293
Alignment:
Q  47 ctcttagtgtggttttgctatacattaggcttaggttgttttgttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctc 143  Q
    ||||| |||||||||||||||||| ||| ||  || ||||||||||||||| |||||||| |||||||  ||||| ||||| | ||||| |||||||    
T  35197 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctc 35293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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